PlantSME Plant secondary metabolism enzyme database

Arabidopsis thaliana (arabidopsis_thaliana)

Imported from atlas release summary for Arabidopsis thaliana.

2149
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 623 19 BAHD (275) View species results
Alkaloid pathway 545 22 NMT (110) View species results
Phenylpropanoid pathway 395 11 POD (174) View species results
Flavonoid pathway 216 11 UFGT (133) View species results
Steroid pathway 216 12 SMT1/SMT2/SMT3 (88) View species results
Rosmarinic acid pathway 154 7 C4H (58) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1926 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 374 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Gene Pathway Family Confidence Status
Atha01G0068740.1 Alkaloid 7DLGT medium pass
Atha02G0008690.1 Alkaloid 7DLGT low borderline
Atha02G0008690.2 Alkaloid 7DLGT low borderline
Atha02G0008700.1 Alkaloid 7DLGT low borderline
Atha02G0008700.2 Alkaloid 7DLGT low borderline
Atha02G0009810.1 Alkaloid 7DLGT low borderline
Atha02G0009810.2 Alkaloid 7DLGT low borderline
Atha02G0009810.3 Alkaloid 7DLGT low borderline
Atha02G0009810.4 Alkaloid 7DLGT low borderline
Atha02G0011610.1 Alkaloid 7DLGT medium pass
Atha02G0011620.1 Alkaloid 7DLGT medium pass
Atha02G0015890.1 Alkaloid 7DLGT low borderline
Atha02G0016250.1 Alkaloid 7DLGT low borderline
Atha02G0016630.1 Alkaloid 7DLGT low borderline
Atha02G0016640.1 Alkaloid 7DLGT medium pass
Atha02G0019940.1 Alkaloid 7DLGT medium pass
Atha02G0021610.1 Alkaloid 7DLGT low borderline
Atha02G0023320.1 Alkaloid 7DLGT low borderline
Atha02G0023340.1 Alkaloid 7DLGT low borderline
Atha02G0023360.1 Alkaloid 7DLGT low borderline
Atha02G0023370.1 Alkaloid 7DLGT low borderline
Atha02G0023780.1 Alkaloid 7DLGT low borderline
Atha02G0023780.2 Alkaloid 7DLGT low borderline
Atha02G0023790.1 Alkaloid 7DLGT low borderline
Atha02G0023790.2 Alkaloid 7DLGT low borderline
Atha02G0025540.1 Alkaloid 7DLGT low borderline
Atha02G0025540.2 Alkaloid 7DLGT low borderline
Atha02G0025580.1 Alkaloid 7DLGT low borderline
Atha02G0030940.1 Alkaloid 7DLGT low borderline
Atha02G0030950.1 Alkaloid 7DLGT low borderline
Atha02G0030960.1 Alkaloid 7DLGT low borderline
Atha02G0030970.1 Alkaloid 7DLGT medium pass
Atha02G0030980.1 Alkaloid 7DLGT medium pass
Atha02G0030990.1 Alkaloid 7DLGT low borderline
Atha02G0031180.1 Alkaloid 7DLGT medium pass
Atha02G0038650.1 Alkaloid 7DLGT low borderline
Atha02G0038660.1 Alkaloid 7DLGT low borderline
Atha02G0038660.2 Alkaloid 7DLGT low borderline
Atha03G0001330.1 Alkaloid 7DLGT medium pass
Atha03G0011120.1 Alkaloid 7DLGT high pass
Atha03G0017030.1 Alkaloid 7DLGT low borderline
Atha03G0017030.2 Alkaloid 7DLGT low borderline
Atha03G0017030.3 Alkaloid 7DLGT low borderline
Atha03G0022650.1 Alkaloid 7DLGT low borderline
Atha03G0022840.1 Alkaloid 7DLGT low borderline
Atha03G0022850.1 Alkaloid 7DLGT low borderline
Atha03G0022870.1 Alkaloid 7DLGT low borderline
Atha03G0022880.1 Alkaloid 7DLGT medium pass
Atha03G0022890.1 Alkaloid 7DLGT low borderline
Atha03G0023450.1 Alkaloid 7DLGT low borderline