PlantSME Plant secondary metabolism enzyme database

Arabidopsis thaliana (arabidopsis_thaliana)

Imported from atlas release summary for Arabidopsis thaliana.

2149
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 623 19 BAHD (275) View species results
Alkaloid pathway 545 22 NMT (110) View species results
Phenylpropanoid pathway 395 11 POD (174) View species results
Flavonoid pathway 216 11 UFGT (133) View species results
Steroid pathway 216 12 SMT1/SMT2/SMT3 (88) View species results
Rosmarinic acid pathway 154 7 C4H (58) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1926 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 374 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
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Gene Pathway Family Confidence Status
Atha03G0022260.3 Rosmarinic Acid 4CL medium pass
Atha03G0025220.1 Rosmarinic Acid 4CL low borderline
Atha03G0039310.1 Rosmarinic Acid 4CL medium pass
Atha04G0005500.1 Rosmarinic Acid 4CL medium pass
Atha04G0009370.1 Rosmarinic Acid 4CL low borderline
Atha04G0012700.1 Rosmarinic Acid 4CL low borderline
Atha04G0018730.1 Rosmarinic Acid 4CL medium pass
Atha04G0024070.1 Rosmarinic Acid 4CL low borderline
Atha05G0015530.1 Rosmarinic Acid 4CL medium pass
Atha05G0015560.1 Rosmarinic Acid 4CL medium pass
Atha05G0026590.1 Rosmarinic Acid 4CL low borderline
Atha05G0030000.1 Rosmarinic Acid 4CL low borderline
Atha05G0030000.2 Rosmarinic Acid 4CL low borderline
Atha05G0030000.3 Rosmarinic Acid 4CL low borderline
Atha05G0030000.4 Rosmarinic Acid 4CL low borderline
Atha05G0030000.5 Rosmarinic Acid 4CL low borderline
Atha05G0031250.1 Rosmarinic Acid 4CL medium pass
Atha05G0031250.2 Rosmarinic Acid 4CL medium pass
Atha05G0031250.3 Rosmarinic Acid 4CL medium pass
Atha05G0031250.4 Rosmarinic Acid 4CL medium pass
Atha05G0058690.1 Rosmarinic Acid 4CL medium pass
Atha01G0000190.1 Rosmarinic Acid C4H low borderline
Atha01G0000190.2 Rosmarinic Acid C4H low borderline
Atha01G0000280.1 Rosmarinic Acid C4H low borderline
Atha01G0004420.1 Rosmarinic Acid C4H low borderline
Atha01G0004420.2 Rosmarinic Acid C4H low borderline
Atha01G0011460.1 Rosmarinic Acid C4H low borderline
Atha01G0011480.1 Rosmarinic Acid C4H medium pass
Atha01G0011480.2 Rosmarinic Acid C4H low borderline
Atha01G0013060.1 Rosmarinic Acid C4H low borderline
Atha01G0013060.2 Rosmarinic Acid C4H medium pass
Atha01G0013070.1 Rosmarinic Acid C4H medium pass
Atha01G0013070.2 Rosmarinic Acid C4H low borderline
Atha01G0013080.1 Rosmarinic Acid C4H medium pass
Atha01G0013090.1 Rosmarinic Acid C4H low borderline
Atha01G0013120.1 Rosmarinic Acid C4H low borderline
Atha01G0013120.2 Rosmarinic Acid C4H low borderline
Atha01G0013140.1 Rosmarinic Acid C4H low borderline
Atha01G0013760.1 Rosmarinic Acid C4H low borderline
Atha01G0016600.1 Rosmarinic Acid C4H low borderline
Atha01G0016610.1 Rosmarinic Acid C4H low borderline
Atha01G0016610.2 Rosmarinic Acid C4H low borderline
Atha01G0019910.1 Rosmarinic Acid C4H low borderline
Atha01G0019910.3 Rosmarinic Acid C4H low borderline
Atha01G0025070.1 Rosmarinic Acid C4H low borderline
Atha01G0028450.1 Rosmarinic Acid C4H low borderline
Atha01G0033440.1 Rosmarinic Acid C4H low borderline
Atha01G0033440.2 Rosmarinic Acid C4H low borderline
Atha01G0033440.3 Rosmarinic Acid C4H low borderline
Atha01G0033440.4 Rosmarinic Acid C4H low borderline