Arabidopsis thaliana (arabidopsis_thaliana)
Imported from atlas release summary for Arabidopsis thaliana.
2639
Candidate Protein Records
2149
Pathway-Level Records
5151
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
5151
Family-Level Calls
BAHD
6.17%
C4H
5.9%
C3'H/CYP98A
5.73%
4CL
4.14%
CYP76
3.81%
IFS
3.71%
POD
3.61%
NMT
3.42%
Other Families
63.52%
More Families (95)
T3O
158
3.07%
UFGT
148
2.87%
UGT
144
2.8%
F3H
143
2.78%
DWF4/CYP90B1
139
2.7%
7DLGT
137
2.66%
SMT1/SMT2/SMT3
123
2.39%
SGD
108
2.1%
BR6OX2/CYP85A2
97
1.88%
CAS
96
1.86%
CODM/T6ODM
87
1.69%
F3'H/CYP75B
86
1.67%
STR
82
1.59%
CYP71
78
1.51%
TRI/TRII
74
1.44%
CAD
64
1.24%
T16H
62
1.2%
H6H
56
1.09%
IFR
53
1.03%
CSE
50
0.97%
TPS
50
0.97%
GES
48
0.93%
IO
46
0.89%
FNS
44
0.85%
LAMT
40
0.78%
ANR
39
0.76%
CYP90D1
39
0.76%
LAC
38
0.74%
F5H/CYP84A
37
0.72%
PYKS
35
0.68%
SLS
35
0.68%
CCR
34
0.66%
BBE
33
0.64%
NCS
33
0.64%
COMT
32
0.62%
8HGO
31
0.6%
GS
31
0.6%
RAS
31
0.6%
TAT
31
0.6%
G8O/G8H
28
0.54%
CNMT
28
0.54%
F3'5'H/CYP75A
26
0.5%
CPD/CYP90A1
26
0.5%
HCT
25
0.49%
16OMT
21
0.41%
PMT
21
0.41%
GGPPS
20
0.39%
7DLH
19
0.37%
COR
17
0.33%
ANS/LDOX
17
0.33%
CPR
17
0.33%
BR6OX1/CYP85A1
17
0.33%
CYP51G1
16
0.31%
PAL
15
0.29%
FPPS
15
0.29%
AACT
14
0.27%
DFR
13
0.25%
CCoAOMT
13
0.25%
CYP719
12
0.23%
SQE
12
0.23%
MPO
11
0.21%
TYDC_DDC
11
0.21%
SMO1/SMO2
11
0.21%
MVK
11
0.21%
ROT3/CYP90C1
10
0.19%
DXS
10
0.19%
SQS/FDFT1
9
0.17%
CHI
8
0.16%
DET2
7
0.14%
MCT/IspD
7
0.14%
ISY
6
0.12%
DWF7
6
0.12%
MVD
6
0.12%
CYP80F1
5
0.1%
CHS
5
0.1%
FLS
5
0.1%
HPPR
5
0.1%
CMK/IspE
5
0.1%
HDS/IspG
5
0.1%
XMT_MXMT_DXMT
4
0.08%
CYP80B1
4
0.08%
HYD1
4
0.08%
DWF1
4
0.08%
FK
4
0.08%
ADC
3
0.06%
CPI1
3
0.06%
IDI
3
0.06%
HMGS
3
0.06%
TDC
2
0.04%
DWF5
2
0.04%
PMK
2
0.04%
MDS/IspF
2
0.04%
HMGR
2
0.04%
DXR
2
0.04%
HDR/IspH
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 623 | 19 | BAHD (275) | View species results |
| Alkaloid pathway | 545 | 22 | NMT (110) | View species results |
| Phenylpropanoid pathway | 395 | 11 | POD (174) | View species results |
| Flavonoid pathway | 216 | 11 | UFGT (133) | View species results |
| Steroid pathway | 216 | 12 | SMT1/SMT2/SMT3 (88) | View species results |
| Rosmarinic acid pathway | 154 | 7 | C4H (58) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1926 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 374 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
| Protein/Isoform Record | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| Atha02G0031540.1 | Alkaloid | STR | low | borderline |
| Atha02G0031540.2 | Alkaloid | STR | low | borderline |
| Atha02G0031540.3 | Alkaloid | STR | low | borderline |
| Atha02G0031540.4 | Alkaloid | STR | low | borderline |
| Atha02G0031610.1 | Alkaloid | STR | medium | pass |
| Atha02G0033640.1 | Alkaloid | STR | medium | pass |
| Atha02G0035880.1 | Alkaloid | STR | medium | pass |
| Atha02G0035890.1 | Alkaloid | STR | medium | pass |
| Atha02G0036370.1 | Alkaloid | STR | low | borderline |
| Atha02G0036370.2 | Alkaloid | STR | low | borderline |
| Atha03G0013180.1 | Alkaloid | STR | low | borderline |
| Atha03G0016840.1 | Alkaloid | STR | low | borderline |
| Atha03G0016840.2 | Alkaloid | STR | low | borderline |
| Atha03G0022080.1 | Alkaloid | STR | low | borderline |
| Atha03G0027150.1 | Alkaloid | STR | low | borderline |
| Atha03G0027150.2 | Alkaloid | STR | medium | pass |
| Atha03G0032360.1 | Alkaloid | STR | low | borderline |
| Atha03G0041900.1 | Alkaloid | STR | low | borderline |
| Atha03G0041910.1 | Alkaloid | STR | medium | pass |
| Atha03G0041910.2 | Alkaloid | STR | low | borderline |
| Atha03G0041920.1 | Alkaloid | STR | medium | pass |
| Atha03G0041930.1 | Alkaloid | STR | medium | pass |
| Atha03G0042850.1 | Alkaloid | STR | low | borderline |
| Atha03G0044110.1 | Alkaloid | STR | low | borderline |
| Atha03G0044140.1 | Alkaloid | STR | medium | pass |
| Atha03G0045760.1 | Alkaloid | STR | medium | pass |
| Atha03G0045770.1 | Alkaloid | STR | medium | pass |
| Atha03G0045770.2 | Alkaloid | STR | medium | pass |
| Atha03G0045780.1 | Alkaloid | STR | medium | pass |
| Atha03G0045800.1 | Alkaloid | STR | medium | pass |
| Atha03G0047780.1 | Alkaloid | STR | medium | pass |
| Atha03G0047790.1 | Alkaloid | STR | medium | pass |
| Atha03G0047790.2 | Alkaloid | STR | medium | pass |
| Atha03G0047800.1 | Alkaloid | STR | medium | pass |
| Atha03G0050410.1 | Alkaloid | STR | medium | pass |
| Atha03G0050410.2 | Alkaloid | STR | medium | pass |
| Atha03G0050410.3 | Alkaloid | STR | medium | pass |
| Atha04G0026160.1 | Alkaloid | STR | low | borderline |
| Atha04G0027940.1 | Alkaloid | STR | low | borderline |
| Atha05G0005960.1 | Alkaloid | STR | low | borderline |
| Atha05G0005960.2 | Alkaloid | STR | low | borderline |
| Atha05G0005960.3 | Alkaloid | STR | low | borderline |
| Atha05G0005960.4 | Alkaloid | STR | medium | pass |
| Atha05G0012620.1 | Alkaloid | STR | medium | pass |
| Atha05G0018860.1 | Alkaloid | STR | low | borderline |
| Atha05G0018860.2 | Alkaloid | STR | low | borderline |
| Atha05G0020860.1 | Alkaloid | STR | medium | pass |
| Atha05G0020860.2 | Alkaloid | STR | medium | pass |
| Atha05G0020860.3 | Alkaloid | STR | medium | pass |
| Atha05G0032390.1 | Alkaloid | STR | low | borderline |