PlantSME Plant secondary metabolism enzyme database

Arabidopsis thaliana (arabidopsis_thaliana)

Imported from atlas release summary for Arabidopsis thaliana.

2639
Candidate Protein Records
2149
Pathway-Level Records
5151
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 623 19 BAHD (275) View species results
Alkaloid pathway 545 22 NMT (110) View species results
Phenylpropanoid pathway 395 11 POD (174) View species results
Flavonoid pathway 216 11 UFGT (133) View species results
Steroid pathway 216 12 SMT1/SMT2/SMT3 (88) View species results
Rosmarinic acid pathway 154 7 C4H (58) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1926 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 374 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Atha05G0032450.1 Alkaloid STR low borderline
Atha05G0047460.1 Alkaloid STR low borderline
Atha05G0055930.1 Alkaloid STR low borderline
Atha01G0000280.1 Alkaloid T16H medium borderline
Atha01G0011460.1 Alkaloid T16H medium borderline
Atha01G0011480.1 Alkaloid T16H medium borderline
Atha01G0011480.2 Alkaloid T16H medium borderline
Atha02G0001660.1 Alkaloid T16H medium borderline
Atha02G0018500.2 Alkaloid T16H medium pass
Atha02G0020500.1 Alkaloid T16H medium borderline
Atha02G0022450.1 Alkaloid T16H medium borderline
Atha02G0022460.1 Alkaloid T16H medium borderline
Atha02G0024140.1 Alkaloid T16H medium borderline
Atha02G0024410.1 Alkaloid T16H medium borderline
Atha02G0024440.1 Alkaloid T16H medium borderline
Atha02G0028540.1 Alkaloid T16H medium borderline
Atha02G0028550.1 Alkaloid T16H medium borderline
Atha02G0040480.3 Alkaloid T16H medium borderline
Atha03G0002850.1 Alkaloid T16H medium borderline
Atha03G0010250.1 Alkaloid T16H medium borderline
Atha03G0021010.1 Alkaloid T16H medium borderline
Atha03G0021010.2 Alkaloid T16H medium borderline
Atha03G0021010.3 Alkaloid T16H medium borderline
Atha03G0021010.4 Alkaloid T16H medium borderline
Atha03G0021010.5 Alkaloid T16H medium borderline
Atha03G0021010.6 Alkaloid T16H medium borderline
Atha03G0021020.1 Alkaloid T16H medium borderline
Atha03G0021020.2 Alkaloid T16H medium borderline
Atha03G0021030.1 Alkaloid T16H medium borderline
Atha03G0021040.1 Alkaloid T16H medium borderline
Atha03G0021050.1 Alkaloid T16H medium borderline
Atha03G0021050.2 Alkaloid T16H medium borderline
Atha03G0021050.3 Alkaloid T16H medium borderline
Atha03G0021050.4 Alkaloid T16H medium borderline
Atha03G0021060.2 Alkaloid T16H medium borderline
Atha03G0021070.1 Alkaloid T16H medium borderline
Atha03G0021950.1 Alkaloid T16H medium borderline
Atha03G0021970.1 Alkaloid T16H medium borderline
Atha03G0021980.1 Alkaloid T16H medium borderline
Atha03G0021980.2 Alkaloid T16H medium borderline
Atha03G0026730.2 Alkaloid T16H medium borderline
Atha03G0032490.1 Alkaloid T16H medium borderline
Atha03G0038550.1 Alkaloid T16H medium borderline
Atha03G0038570.1 Alkaloid T16H medium borderline
Atha03G0038570.2 Alkaloid T16H medium borderline
Atha03G0041100.1 Alkaloid T16H medium borderline
Atha03G0051920.2 Alkaloid T16H medium borderline
Atha04G0011840.1 Alkaloid T16H medium borderline
Atha04G0011860.1 Alkaloid T16H medium borderline
Atha04G0011860.2 Alkaloid T16H medium borderline