PlantSME Plant secondary metabolism enzyme database

Arabidopsis thaliana (arabidopsis_thaliana)

Imported from atlas release summary for Arabidopsis thaliana.

2639
Candidate Protein Records
2149
Pathway-Level Records
5151
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 623 19 BAHD (275) View species results
Alkaloid pathway 545 22 NMT (110) View species results
Phenylpropanoid pathway 395 11 POD (174) View species results
Flavonoid pathway 216 11 UFGT (133) View species results
Steroid pathway 216 12 SMT1/SMT2/SMT3 (88) View species results
Rosmarinic acid pathway 154 7 C4H (58) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1926 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 374 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Atha04G0014380.1 Alkaloid T16H medium borderline
Atha04G0014380.2 Alkaloid T16H medium borderline
Atha04G0014400.1 Alkaloid T16H medium borderline
Atha04G0014430.1 Alkaloid T16H medium borderline
Atha04G0020030.1 Alkaloid T16H medium borderline
Atha04G0020030.2 Alkaloid T16H medium borderline
Atha05G0003890.1 Alkaloid T16H medium borderline
Atha05G0006350.1 Alkaloid T16H medium borderline
Atha05G0013480.3 Alkaloid T16H low borderline
Atha05G0024060.1 Alkaloid T16H medium borderline
Atha05G0029320.1 Alkaloid T16H medium borderline
Atha05G0029340.1 Alkaloid T16H medium borderline
Atha05G0036110.1 Alkaloid T16H medium borderline
Atha05G0046430.1 Alkaloid T16H low borderline
Atha05G0056530.1 Alkaloid T16H medium borderline
Atha01G0000630.1 Alkaloid T3O low borderline
Atha01G0004420.1 Alkaloid T3O medium pass
Atha01G0004420.2 Alkaloid T3O medium pass
Atha01G0012700.1 Alkaloid T3O medium pass
Atha01G0012700.2 Alkaloid T3O medium pass
Atha01G0012700.3 Alkaloid T3O medium pass
Atha01G0012700.4 Alkaloid T3O low borderline
Atha01G0013060.1 Alkaloid T3O medium borderline
Atha01G0013060.2 Alkaloid T3O medium borderline
Atha01G0013070.1 Alkaloid T3O medium borderline
Atha01G0013080.1 Alkaloid T3O medium borderline
Atha01G0013090.1 Alkaloid T3O medium borderline
Atha01G0013760.1 Alkaloid T3O medium borderline
Atha01G0019910.1 Alkaloid T3O medium pass
Atha01G0019910.3 Alkaloid T3O medium pass
Atha01G0031670.1 Alkaloid T3O medium pass
Atha01G0033440.1 Alkaloid T3O medium borderline
Atha01G0033440.2 Alkaloid T3O medium borderline
Atha01G0033440.3 Alkaloid T3O medium borderline
Atha01G0033440.4 Alkaloid T3O medium borderline
Atha01G0033440.5 Alkaloid T3O medium borderline
Atha01G0033450.1 Alkaloid T3O medium borderline
Atha01G0033450.2 Alkaloid T3O medium borderline
Atha01G0034290.1 Alkaloid T3O medium pass
Atha01G0041110.1 Alkaloid T3O medium borderline
Atha01G0046170.4 Alkaloid T3O low borderline
Atha01G0046170.5 Alkaloid T3O low borderline
Atha01G0046990.1 Alkaloid T3O medium pass
Atha01G0046990.2 Alkaloid T3O medium pass
Atha01G0055580.1 Alkaloid T3O medium pass
Atha01G0064480.1 Alkaloid T3O medium borderline
Atha01G0068950.1 Alkaloid T3O medium pass
Atha02G0017470.1 Alkaloid T3O medium borderline
Atha02G0022680.1 Alkaloid T3O medium pass
Atha02G0022680.2 Alkaloid T3O medium pass