PlantSME Plant secondary metabolism enzyme database

Arabidopsis thaliana (arabidopsis_thaliana)

Imported from atlas release summary for Arabidopsis thaliana.

2639
Candidate Protein Records
2149
Pathway-Level Records
5151
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 623 19 BAHD (275) View species results
Alkaloid pathway 545 22 NMT (110) View species results
Phenylpropanoid pathway 395 11 POD (174) View species results
Flavonoid pathway 216 11 UFGT (133) View species results
Steroid pathway 216 12 SMT1/SMT2/SMT3 (88) View species results
Rosmarinic acid pathway 154 7 C4H (58) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1926 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 374 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Atha02G0022680.3 Alkaloid T3O medium pass
Atha02G0026300.1 Alkaloid T3O medium pass
Atha02G0026300.2 Alkaloid T3O medium pass
Atha02G0035410.1 Alkaloid T3O medium borderline
Atha02G0036960.1 Alkaloid T3O medium borderline
Atha02G0037590.1 Alkaloid T3O medium pass
Atha02G0040450.1 Alkaloid T3O medium borderline
Atha02G0040460.1 Alkaloid T3O medium borderline
Atha02G0040470.1 Alkaloid T3O medium borderline
Atha02G0040480.1 Alkaloid T3O medium borderline
Atha02G0040480.2 Alkaloid T3O medium borderline
Atha03G0001110.1 Alkaloid T3O low borderline
Atha03G0009370.1 Alkaloid T3O low borderline
Atha03G0013880.1 Alkaloid T3O medium pass
Atha03G0013880.2 Alkaloid T3O medium pass
Atha03G0020100.1 Alkaloid T3O medium pass
Atha03G0020100.2 Alkaloid T3O medium pass
Atha03G0021060.1 Alkaloid T3O medium borderline
Atha03G0026730.1 Alkaloid T3O medium borderline
Atha03G0027810.1 Alkaloid T3O medium borderline
Atha03G0027820.1 Alkaloid T3O medium borderline
Atha03G0027830.1 Alkaloid T3O medium borderline
Atha03G0027840.1 Alkaloid T3O medium borderline
Atha03G0027840.2 Alkaloid T3O medium borderline
Atha03G0027850.1 Alkaloid T3O medium borderline
Atha03G0027860.1 Alkaloid T3O medium borderline
Atha03G0027870.1 Alkaloid T3O medium borderline
Atha03G0027880.1 Alkaloid T3O medium borderline
Atha03G0027890.1 Alkaloid T3O medium borderline
Atha03G0027940.1 Alkaloid T3O medium borderline
Atha03G0027950.1 Alkaloid T3O medium borderline
Atha03G0027950.2 Alkaloid T3O medium borderline
Atha03G0027960.1 Alkaloid T3O medium borderline
Atha03G0027960.2 Alkaloid T3O medium borderline
Atha03G0027970.1 Alkaloid T3O medium borderline
Atha03G0027980.1 Alkaloid T3O medium borderline
Atha03G0027990.1 Alkaloid T3O medium borderline
Atha03G0028000.1 Alkaloid T3O medium borderline
Atha03G0028590.1 Alkaloid T3O medium borderline
Atha03G0030710.1 Alkaloid T3O medium borderline
Atha03G0031950.1 Alkaloid T3O medium pass
Atha03G0032050.1 Alkaloid T3O medium pass
Atha03G0034230.1 Alkaloid T3O medium borderline
Atha03G0035100.1 Alkaloid T3O medium pass
Atha03G0038540.1 Alkaloid T3O medium borderline
Atha03G0038560.1 Alkaloid T3O medium borderline
Atha03G0038560.2 Alkaloid T3O medium borderline
Atha03G0038590.1 Alkaloid T3O medium borderline
Atha03G0038600.1 Alkaloid T3O medium borderline
Atha03G0038840.1 Alkaloid T3O low borderline