PlantSME Plant secondary metabolism enzyme database

Arabidopsis thaliana (arabidopsis_thaliana)

Imported from atlas release summary for Arabidopsis thaliana.

2149
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 623 19 BAHD (275) View species results
Alkaloid pathway 545 22 NMT (110) View species results
Phenylpropanoid pathway 395 11 POD (174) View species results
Flavonoid pathway 216 11 UFGT (133) View species results
Steroid pathway 216 12 SMT1/SMT2/SMT3 (88) View species results
Rosmarinic acid pathway 154 7 C4H (58) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1926 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 374 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Gene Pathway Family Confidence Status
Atha05G0044070.1 Alkaloid 7DLGT low borderline
Atha05G0048680.1 Alkaloid 7DLGT low borderline
Atha05G0048700.1 Alkaloid 7DLGT low borderline
Atha05G0048770.1 Alkaloid 7DLGT low borderline
Atha05G0054710.1 Alkaloid 7DLGT medium pass
Atha05G0054720.1 Alkaloid 7DLGT high pass
Atha05G0061010.1 Alkaloid 7DLGT low borderline
Atha05G0062300.1 Alkaloid 7DLGT medium pass
Atha01G0053450.1 Alkaloid 7DLH medium borderline
Atha01G0057080.2 Alkaloid 7DLH low borderline
Atha01G0065510.1 Alkaloid 7DLH medium borderline
Atha02G0022680.4 Alkaloid 7DLH low borderline
Atha02G0040870.1 Alkaloid 7DLH medium borderline
Atha03G0014970.1 Alkaloid 7DLH medium borderline
Atha03G0014970.2 Alkaloid 7DLH medium borderline
Atha03G0014980.1 Alkaloid 7DLH medium borderline
Atha03G0014990.1 Alkaloid 7DLH medium borderline
Atha03G0014990.2 Alkaloid 7DLH medium borderline
Atha03G0014990.3 Alkaloid 7DLH medium borderline
Atha03G0015010.1 Alkaloid 7DLH medium borderline
Atha03G0015020.1 Alkaloid 7DLH medium borderline
Atha03G0015020.2 Alkaloid 7DLH medium borderline
Atha05G0024000.1 Alkaloid 7DLH medium borderline
Atha05G0024000.2 Alkaloid 7DLH medium borderline
Atha05G0024010.2 Alkaloid 7DLH low borderline
Atha05G0046970.1 Alkaloid 7DLH medium borderline
Atha05G0053970.1 Alkaloid 7DLH medium borderline
Atha01G0022840.1 Alkaloid 8HGO medium borderline
Atha01G0022840.2 Alkaloid 8HGO medium borderline
Atha01G0022840.3 Alkaloid 8HGO medium borderline
Atha01G0022840.4 Alkaloid 8HGO medium borderline
Atha01G0022840.5 Alkaloid 8HGO medium borderline
Atha01G0022850.1 Alkaloid 8HGO medium borderline
Atha01G0032690.1 Alkaloid 8HGO medium borderline
Atha01G0033630.1 Alkaloid 8HGO low borderline
Atha01G0054530.1 Alkaloid 8HGO medium borderline
Atha01G0054530.2 Alkaloid 8HGO medium borderline
Atha01G0054530.3 Alkaloid 8HGO medium pass
Atha01G0067540.1 Alkaloid 8HGO medium borderline
Atha02G0034290.1 Alkaloid 8HGO low borderline
Atha03G0027550.1 Alkaloid 8HGO low borderline
Atha03G0046530.1 Alkaloid 8HGO low borderline
Atha03G0046530.2 Alkaloid 8HGO low borderline
Atha03G0046530.3 Alkaloid 8HGO low borderline
Atha03G0046530.4 Alkaloid 8HGO low borderline
Atha03G0046530.5 Alkaloid 8HGO low borderline
Atha03G0046530.6 Alkaloid 8HGO low borderline
Atha03G0046530.7 Alkaloid 8HGO low borderline
Atha04G0022110.1 Alkaloid 8HGO medium borderline
Atha04G0022110.2 Alkaloid 8HGO medium borderline