PlantSME Plant secondary metabolism enzyme database

Arabidopsis thaliana (arabidopsis_thaliana)

Imported from atlas release summary for Arabidopsis thaliana.

2149
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 623 19 BAHD (275) View species results
Alkaloid pathway 545 22 NMT (110) View species results
Phenylpropanoid pathway 395 11 POD (174) View species results
Flavonoid pathway 216 11 UFGT (133) View species results
Steroid pathway 216 12 SMT1/SMT2/SMT3 (88) View species results
Rosmarinic acid pathway 154 7 C4H (58) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1926 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 374 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Gene Pathway Family Confidence Status
Atha04G0022110.3 Alkaloid 8HGO medium borderline
Atha05G0023850.1 Alkaloid 8HGO medium borderline
Atha05G0023850.2 Alkaloid 8HGO medium borderline
Atha05G0023850.3 Alkaloid 8HGO medium pass
Atha05G0023850.4 Alkaloid 8HGO medium borderline
Atha05G0035750.1 Alkaloid 8HGO medium borderline
Atha05G0037710.1 Alkaloid 8HGO medium borderline
Atha05G0037710.2 Alkaloid 8HGO medium borderline
Atha02G0009440.1 Alkaloid ADC medium pass
Atha04G0036030.1 Alkaloid ADC medium pass
Atha04G0036030.2 Alkaloid ADC medium pass
Atha01G0001010.1 Alkaloid BBE medium borderline
Atha01G0011670.1 Alkaloid BBE medium borderline
Atha01G0026200.1 Alkaloid BBE medium borderline
Atha01G0026210.1 Alkaloid BBE medium borderline
Atha01G0026220.1 Alkaloid BBE medium borderline
Atha01G0026230.1 Alkaloid BBE medium borderline
Atha01G0026240.1 Alkaloid BBE medium borderline
Atha01G0030550.1 Alkaloid BBE medium borderline
Atha01G0030560.1 Alkaloid BBE medium borderline
Atha01G0030570.1 Alkaloid BBE medium borderline
Atha01G0030580.1 Alkaloid BBE medium borderline
Atha01G0030590.1 Alkaloid BBE medium borderline
Atha01G0030590.2 Alkaloid BBE medium borderline
Atha01G0030630.1 Alkaloid BBE medium borderline
Atha01G0030630.2 Alkaloid BBE medium borderline
Atha01G0034330.1 Alkaloid BBE medium borderline
Atha02G0028850.1 Alkaloid BBE medium borderline
Atha02G0028860.1 Alkaloid BBE medium borderline
Atha04G0020620.1 Alkaloid BBE medium borderline
Atha04G0020640.1 Alkaloid BBE medium borderline
Atha04G0020650.1 Alkaloid BBE medium borderline
Atha04G0020650.2 Alkaloid BBE medium borderline
Atha04G0020670.1 Alkaloid BBE medium borderline
Atha04G0020690.1 Alkaloid BBE medium borderline
Atha05G0038200.1 Alkaloid BBE medium borderline
Atha05G0038200.2 Alkaloid BBE medium borderline
Atha05G0038220.1 Alkaloid BBE medium borderline
Atha05G0038220.2 Alkaloid BBE medium borderline
Atha05G0038230.1 Alkaloid BBE medium borderline
Atha05G0038240.1 Alkaloid BBE medium borderline
Atha05G0038250.1 Alkaloid BBE medium borderline
Atha05G0038280.1 Alkaloid BBE medium borderline
Atha05G0038280.2 Alkaloid BBE medium borderline
Atha01G0013910.1 Alkaloid CNMT low borderline
Atha01G0013910.2 Alkaloid CNMT low borderline
Atha01G0013910.3 Alkaloid CNMT low borderline
Atha01G0013910.4 Alkaloid CNMT low borderline
Atha01G0013910.5 Alkaloid CNMT low borderline
Atha01G0045580.2 Alkaloid CNMT low borderline