PlantSME Plant secondary metabolism enzyme database

Arabidopsis thaliana (arabidopsis_thaliana)

Imported from atlas release summary for Arabidopsis thaliana.

2639
Candidate Protein Records
2149
Pathway-Level Records
5151
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 623 19 BAHD (275) View species results
Alkaloid pathway 545 22 NMT (110) View species results
Phenylpropanoid pathway 395 11 POD (174) View species results
Flavonoid pathway 216 11 UFGT (133) View species results
Steroid pathway 216 12 SMT1/SMT2/SMT3 (88) View species results
Rosmarinic acid pathway 154 7 C4H (58) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1926 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 374 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
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Protein/Isoform Record Pathway Family Confidence Status
Atha03G0043890.1 Rosmarinic Acid C4H low borderline
Atha03G0043910.1 Rosmarinic Acid C4H medium pass
Atha03G0043920.1 Rosmarinic Acid C4H low borderline
Atha03G0051920.1 Rosmarinic Acid C4H low borderline
Atha03G0051920.2 Rosmarinic Acid C4H low borderline
Atha03G0052870.1 Rosmarinic Acid C4H low borderline
Atha03G0052870.2 Rosmarinic Acid C4H low borderline
Atha04G0010710.1 Rosmarinic Acid C4H medium pass
Atha04G0010720.1 Rosmarinic Acid C4H medium pass
Atha04G0010730.1 Rosmarinic Acid C4H medium pass
Atha04G0010740.1 Rosmarinic Acid C4H low borderline
Atha04G0011840.1 Rosmarinic Acid C4H medium pass
Atha04G0011860.1 Rosmarinic Acid C4H medium pass
Atha04G0011860.2 Rosmarinic Acid C4H low borderline
Atha04G0012360.1 Rosmarinic Acid C4H medium pass
Atha04G0014130.1 Rosmarinic Acid C4H low borderline
Atha04G0014350.1 Rosmarinic Acid C4H low borderline
Atha04G0014350.2 Rosmarinic Acid C4H low borderline
Atha04G0014350.3 Rosmarinic Acid C4H low borderline
Atha04G0014360.1 Rosmarinic Acid C4H low borderline
Atha04G0014380.1 Rosmarinic Acid C4H low borderline
Atha04G0014380.2 Rosmarinic Acid C4H low borderline
Atha04G0014400.1 Rosmarinic Acid C4H low borderline
Atha04G0014410.1 Rosmarinic Acid C4H low borderline
Atha04G0014430.1 Rosmarinic Acid C4H low borderline
Atha04G0014450.1 Rosmarinic Acid C4H low borderline
Atha04G0014460.1 Rosmarinic Acid C4H low borderline
Atha04G0014460.2 Rosmarinic Acid C4H low borderline
Atha04G0014460.3 Rosmarinic Acid C4H low borderline
Atha04G0019010.1 Rosmarinic Acid C4H low borderline
Atha04G0019010.2 Rosmarinic Acid C4H low borderline
Atha04G0020020.2 Rosmarinic Acid C4H low borderline
Atha04G0020030.1 Rosmarinic Acid C4H low borderline
Atha04G0020030.2 Rosmarinic Acid C4H low borderline
Atha04G0022820.1 Rosmarinic Acid C4H medium pass
Atha04G0022840.1 Rosmarinic Acid C4H medium pass
Atha04G0028300.1 Rosmarinic Acid C4H low borderline
Atha04G0032470.1 Rosmarinic Acid C4H medium pass
Atha04G0032960.1 Rosmarinic Acid C4H low borderline
Atha04G0032970.1 Rosmarinic Acid C4H low borderline
Atha04G0032990.1 Rosmarinic Acid C4H low borderline
Atha04G0033210.1 Rosmarinic Acid C4H low borderline
Atha04G0037660.1 Rosmarinic Acid C4H medium pass
Atha04G0037770.1 Rosmarinic Acid C4H low borderline
Atha04G0038790.1 Rosmarinic Acid C4H medium pass
Atha04G0038800.1 Rosmarinic Acid C4H medium pass
Atha04G0038810.1 Rosmarinic Acid C4H low borderline
Atha04G0038820.1 Rosmarinic Acid C4H low borderline
Atha04G0038830.1 Rosmarinic Acid C4H medium pass
Atha04G0038840.1 Rosmarinic Acid C4H medium pass