PlantSME Plant secondary metabolism enzyme database

Arabidopsis thaliana (arabidopsis_thaliana)

Imported from atlas release summary for Arabidopsis thaliana.

2149
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 623 19 BAHD (275) View species results
Alkaloid pathway 545 22 NMT (110) View species results
Phenylpropanoid pathway 395 11 POD (174) View species results
Flavonoid pathway 216 11 UFGT (133) View species results
Steroid pathway 216 12 SMT1/SMT2/SMT3 (88) View species results
Rosmarinic acid pathway 154 7 C4H (58) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1926 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 374 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Steroid pathway
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Gene Pathway Family Confidence Status
Atha04G0022840.1 Steroid CYP51G1 medium borderline
Atha04G0037660.1 Steroid CYP51G1 medium borderline
Atha05G0024060.1 Steroid CYP51G1 medium borderline
Atha05G0024060.2 Steroid CYP51G1 medium borderline
Atha05G0036110.1 Steroid CYP51G1 medium borderline
Atha01G0028450.1 Steroid CYP90D1 low borderline
Atha01G0033450.1 Steroid CYP90D1 low borderline
Atha01G0033450.2 Steroid CYP90D1 low borderline
Atha01G0046990.1 Steroid CYP90D1 medium borderline
Atha01G0046990.2 Steroid CYP90D1 medium borderline
Atha02G0020180.1 Steroid CYP90D1 low borderline
Atha02G0040470.1 Steroid CYP90D1 low borderline
Atha02G0040480.3 Steroid CYP90D1 low borderline
Atha03G0013880.1 Steroid CYP90D1 medium borderline
Atha03G0013880.2 Steroid CYP90D1 medium borderline
Atha03G0020100.1 Steroid CYP90D1 medium borderline
Atha03G0020100.2 Steroid CYP90D1 medium borderline
Atha03G0027850.1 Steroid CYP90D1 low borderline
Atha03G0032490.1 Steroid CYP90D1 low borderline
Atha03G0035100.1 Steroid CYP90D1 medium borderline
Atha03G0043890.1 Steroid CYP90D1 low borderline
Atha03G0043920.1 Steroid CYP90D1 low borderline
Atha04G0011860.1 Steroid CYP90D1 low borderline
Atha04G0011860.2 Steroid CYP90D1 low borderline
Atha04G0014130.1 Steroid CYP90D1 medium borderline
Atha04G0014530.1 Steroid CYP90D1 low borderline
Atha04G0019010.1 Steroid CYP90D1 medium borderline
Atha04G0019010.2 Steroid CYP90D1 medium borderline
Atha04G0028300.1 Steroid CYP90D1 low borderline
Atha04G0032470.1 Steroid CYP90D1 low borderline
Atha04G0032960.1 Steroid CYP90D1 low borderline
Atha04G0032970.1 Steroid CYP90D1 low borderline
Atha04G0032990.1 Steroid CYP90D1 low borderline
Atha05G0005070.1 Steroid CYP90D1 medium borderline
Atha05G0005070.2 Steroid CYP90D1 medium borderline
Atha05G0005070.3 Steroid CYP90D1 medium borderline
Atha05G0006360.1 Steroid CYP90D1 low borderline
Atha05G0024000.1 Steroid CYP90D1 low borderline
Atha05G0024000.2 Steroid CYP90D1 low borderline
Atha05G0024050.1 Steroid CYP90D1 low borderline
Atha05G0028970.1 Steroid CYP90D1 low borderline
Atha05G0029350.1 Steroid CYP90D1 medium borderline
Atha05G0039340.1 Steroid CYP90D1 medium borderline
Atha05G0039340.2 Steroid CYP90D1 medium borderline
Atha01G0018410.1 Steroid DET2 low borderline
Atha01G0018410.2 Steroid DET2 low borderline
Atha01G0063950.4 Steroid DET2 medium borderline
Atha01G0063950.5 Steroid DET2 medium borderline
Atha02G0032330.1 Steroid DET2 medium pass
Atha03G0046040.1 Steroid DET2 low borderline