PlantSME Plant secondary metabolism enzyme database

Arabidopsis thaliana (arabidopsis_thaliana)

Imported from atlas release summary for Arabidopsis thaliana.

2639
Candidate Protein Records
2149
Pathway-Level Records
5151
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 623 19 BAHD (275) View species results
Alkaloid pathway 545 22 NMT (110) View species results
Phenylpropanoid pathway 395 11 POD (174) View species results
Flavonoid pathway 216 11 UFGT (133) View species results
Steroid pathway 216 12 SMT1/SMT2/SMT3 (88) View species results
Rosmarinic acid pathway 154 7 C4H (58) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1926 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 374 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Atha03G0050620.3 Steroid CAS medium pass
Atha03G0052390.1 Steroid CAS medium pass
Atha03G0052390.2 Steroid CAS medium pass
Atha03G0052390.3 Steroid CAS medium pass
Atha03G0052390.4 Steroid CAS medium pass
Atha04G0003330.1 Steroid CAS medium pass
Atha04G0013820.1 Steroid CAS medium pass
Atha04G0013820.2 Steroid CAS medium pass
Atha04G0013820.3 Steroid CAS medium pass
Atha04G0013820.4 Steroid CAS medium pass
Atha04G0013820.5 Steroid CAS medium pass
Atha04G0014390.1 Steroid CAS medium pass
Atha04G0014390.2 Steroid CAS medium pass
Atha04G0014420.1 Steroid CAS medium pass
Atha04G0014420.2 Steroid CAS medium pass
Atha04G0016140.1 Steroid CAS medium pass
Atha04G0016140.2 Steroid CAS medium pass
Atha04G0016150.1 Steroid CAS medium pass
Atha04G0016150.2 Steroid CAS medium pass
Atha04G0016150.3 Steroid CAS medium pass
Atha04G0016150.4 Steroid CAS medium pass
Atha05G0022020.1 Steroid CAS medium pass
Atha05G0022020.2 Steroid CAS medium pass
Atha05G0022960.1 Steroid CAS low borderline
Atha05G0022960.2 Steroid CAS low borderline
Atha05G0027070.1 Steroid CAS medium pass
Atha05G0027070.2 Steroid CAS medium pass
Atha05G0027070.3 Steroid CAS medium pass
Atha05G0027070.4 Steroid CAS medium pass
Atha05G0027070.5 Steroid CAS medium pass
Atha05G0027070.6 Steroid CAS medium pass
Atha05G0027080.1 Steroid CAS medium pass
Atha05G0027080.2 Steroid CAS medium pass
Atha05G0027080.3 Steroid CAS medium pass
Atha05G0027080.4 Steroid CAS medium pass
Atha05G0027080.5 Steroid CAS medium pass
Atha05G0029360.1 Steroid CAS medium pass
Atha05G0029360.2 Steroid CAS medium pass
Atha05G0036120.1 Steroid CAS medium pass
Atha05G0042220.1 Steroid CAS medium pass
Atha05G0042220.2 Steroid CAS medium pass
Atha05G0042310.1 Steroid CAS medium pass
Atha01G0012330.1 Steroid CPD/CYP90A1 low borderline
Atha01G0012330.3 Steroid CPD/CYP90A1 low borderline
Atha01G0018100.1 Steroid CPD/CYP90A1 low borderline
Atha01G0019910.1 Steroid CPD/CYP90A1 medium borderline
Atha01G0019910.2 Steroid CPD/CYP90A1 medium borderline
Atha01G0019910.3 Steroid CPD/CYP90A1 medium borderline
Atha01G0048070.1 Steroid CPD/CYP90A1 medium borderline
Atha01G0048070.2 Steroid CPD/CYP90A1 medium borderline