PlantSME Plant secondary metabolism enzyme database

Arabidopsis thaliana (arabidopsis_thaliana)

Imported from atlas release summary for Arabidopsis thaliana.

2639
Candidate Protein Records
2149
Pathway-Level Records
5151
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 623 19 BAHD (275) View species results
Alkaloid pathway 545 22 NMT (110) View species results
Phenylpropanoid pathway 395 11 POD (174) View species results
Flavonoid pathway 216 11 UFGT (133) View species results
Steroid pathway 216 12 SMT1/SMT2/SMT3 (88) View species results
Rosmarinic acid pathway 154 7 C4H (58) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1926 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 374 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Atha01G0055190.1 Steroid CPD/CYP90A1 low borderline
Atha03G0027860.1 Steroid CPD/CYP90A1 medium borderline
Atha03G0034230.1 Steroid CPD/CYP90A1 medium borderline
Atha03G0038840.1 Steroid CPD/CYP90A1 low borderline
Atha03G0043710.1 Steroid CPD/CYP90A1 medium borderline
Atha03G0043910.1 Steroid CPD/CYP90A1 medium borderline
Atha04G0038840.1 Steroid CPD/CYP90A1 low borderline
Atha04G0041070.1 Steroid CPD/CYP90A1 low borderline
Atha04G0041070.2 Steroid CPD/CYP90A1 low borderline
Atha05G0029320.1 Steroid CPD/CYP90A1 medium borderline
Atha05G0029320.2 Steroid CPD/CYP90A1 medium borderline
Atha05G0029340.1 Steroid CPD/CYP90A1 medium borderline
Atha05G0046430.1 Steroid CPD/CYP90A1 low borderline
Atha05G0046890.1 Steroid CPD/CYP90A1 low borderline
Atha05G0046890.2 Steroid CPD/CYP90A1 low borderline
Atha05G0056530.1 Steroid CPD/CYP90A1 low borderline
Atha05G0058750.1 Steroid CPD/CYP90A1 low borderline
Atha05G0058750.2 Steroid CPD/CYP90A1 low borderline
Atha05G0044810.1 Steroid CPI1 high pass
Atha05G0044810.2 Steroid CPI1 high pass
Atha05G0044810.3 Steroid CPI1 high pass
Atha01G0011550.1 Steroid CYP51G1 medium borderline
Atha02G0020500.1 Steroid CYP51G1 medium borderline
Atha02G0024440.1 Steroid CYP51G1 medium borderline
Atha03G0021040.1 Steroid CYP51G1 medium borderline
Atha03G0038540.1 Steroid CYP51G1 medium borderline
Atha03G0038560.1 Steroid CYP51G1 medium borderline
Atha03G0038560.2 Steroid CYP51G1 medium borderline
Atha03G0038570.1 Steroid CYP51G1 medium borderline
Atha03G0038570.2 Steroid CYP51G1 medium borderline
Atha03G0038590.1 Steroid CYP51G1 medium borderline
Atha04G0022820.1 Steroid CYP51G1 medium borderline
Atha04G0022840.1 Steroid CYP51G1 medium borderline
Atha04G0037660.1 Steroid CYP51G1 medium borderline
Atha05G0024060.1 Steroid CYP51G1 medium borderline
Atha05G0024060.2 Steroid CYP51G1 medium borderline
Atha05G0036110.1 Steroid CYP51G1 medium borderline
Atha01G0028450.1 Steroid CYP90D1 low borderline
Atha01G0033450.1 Steroid CYP90D1 low borderline
Atha01G0033450.2 Steroid CYP90D1 low borderline
Atha01G0046990.1 Steroid CYP90D1 medium borderline
Atha01G0046990.2 Steroid CYP90D1 medium borderline
Atha02G0020180.1 Steroid CYP90D1 low borderline
Atha02G0040470.1 Steroid CYP90D1 low borderline
Atha02G0040480.3 Steroid CYP90D1 low borderline
Atha03G0013880.1 Steroid CYP90D1 medium borderline
Atha03G0013880.2 Steroid CYP90D1 medium borderline
Atha03G0020100.1 Steroid CYP90D1 medium borderline
Atha03G0020100.2 Steroid CYP90D1 medium borderline
Atha03G0027850.1 Steroid CYP90D1 low borderline