Barbula amplexifolia (barbula_amplexifolia)
Imported from atlas release summary for Barbula amplexifolia.
691
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
691
Candidate Genes
C4H
6.85%
POD
5.63%
C3'H/CYP98A
5.57%
BAHD
5.38%
PAL
4.95%
4CL
4.4%
CYP76
4.16%
NMT
3.61%
Other Families
59.45%
More Families (95)
STR
44
2.69%
IFS
41
2.51%
PYKS
38
2.32%
F3'H/CYP75B
38
2.32%
DWF4/CYP90B1
35
2.14%
F3H
34
2.08%
IFR
33
2.02%
BR6OX2/CYP85A2
32
1.96%
GS
30
1.83%
T3O
27
1.65%
UFGT
27
1.65%
CHS
27
1.65%
UGT
26
1.59%
7DLGT
25
1.53%
CODM/T6ODM
23
1.41%
IO
22
1.35%
CYP71
22
1.35%
SMT1/SMT2/SMT3
21
1.28%
CAD
20
1.22%
G8O/G8H
19
1.16%
TRI/TRII
15
0.92%
CAS
15
0.92%
H6H
14
0.86%
SLS
13
0.8%
T16H
13
0.8%
F3'5'H/CYP75A
13
0.8%
RAS
13
0.8%
HCT
12
0.73%
COMT
12
0.73%
CSE
10
0.61%
F5H/CYP84A
10
0.61%
CYP90D1
10
0.61%
SGD
9
0.55%
CCR
9
0.55%
LAC
9
0.55%
PMT
8
0.49%
7DLH
8
0.49%
ANR
8
0.49%
CPR
8
0.49%
BR6OX1/CYP85A1
8
0.49%
CYP80B1
7
0.43%
8HGO
7
0.43%
COR
7
0.43%
FNS
7
0.43%
SQS/FDFT1
7
0.43%
CPD/CYP90A1
7
0.43%
CNMT
6
0.37%
MPO
6
0.37%
16OMT
6
0.37%
LAMT
6
0.37%
TAT
5
0.31%
SQE
5
0.31%
AACT
5
0.31%
NCS
4
0.24%
TDC
4
0.24%
CHI
4
0.24%
DFR
4
0.24%
ROT3/CYP90C1
4
0.24%
DWF5
4
0.24%
GGPPS
4
0.24%
BBE
3
0.18%
FLS
3
0.18%
DET2
3
0.18%
MVK
3
0.18%
MVD
3
0.18%
ADC
2
0.12%
CYP719
2
0.12%
TYDC_DDC
2
0.12%
6OMT_4OMT_SOMT
2
0.12%
CCoAOMT
2
0.12%
CYP51G1
2
0.12%
DWF1
2
0.12%
HYD1
2
0.12%
SMO1/SMO2
2
0.12%
MDS/IspF
2
0.12%
HMGR
2
0.12%
DXS
2
0.12%
HDS/IspG
2
0.12%
DXR
2
0.12%
HDR/IspH
2
0.12%
MCT/IspD
2
0.12%
FPPS
2
0.12%
XMT_MXMT_DXMT
1
0.06%
ISY
1
0.06%
GES
1
0.06%
ANS/LDOX
1
0.06%
HPPR
1
0.06%
CPI1
1
0.06%
DWF7
1
0.06%
FK
1
0.06%
PMK
1
0.06%
HMGS
1
0.06%
CMK/IspE
1
0.06%
TPS
1
0.06%
IDI
1
0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Phenylpropanoid pathway | 180 | 12 | POD (89) | View species results |
| Terpenoid pathway | 152 | 19 | BAHD (64) | View species results |
| Alkaloid pathway | 132 | 19 | PYKS (28) | View species results |
| Flavonoid pathway | 107 | 11 | PAL (27) | View species results |
| Rosmarinic acid pathway | 81 | 7 | PAL (27) | View species results |
| Steroid pathway | 39 | 12 | CAS (13) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 604 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 113 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 4CL
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| BAampscaffold_110041740 | Rosmarinic Acid | 4CL | low | borderline | 4CL__00005__sp_P0C5B6_4CLL4_ARATH |
| BAampscaffold_120049270 | Rosmarinic Acid | 4CL | medium | pass | 4CL__00004__sp_O24146_4CL2_TOBAC |
| BAampscaffold_120053950 | Rosmarinic Acid | 4CL | medium | pass | 4CL__00016__sp_Q9M0X9_4CLL7_ARATH |
| BAampscaffold_120057880 | Rosmarinic Acid | 4CL | low | borderline | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| BAampscaffold_130062680 | Rosmarinic Acid | 4CL | low | borderline | 4CL__00006__sp_P17814_4CL1_ORYSJ |
| BAampscaffold_20094820 | Rosmarinic Acid | 4CL | medium | pass | 4CL__00016__sp_Q9M0X9_4CLL7_ARATH |
| BAampscaffold_20095690 | Rosmarinic Acid | 4CL | medium | pass | 4CL__00011__sp_Q6ZAC1_4CL5_ORYSJ |
| BAampscaffold_30123630 | Rosmarinic Acid | 4CL | medium | pass | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| BAampscaffold_40138600 | Rosmarinic Acid | 4CL | low | borderline | 4CL__00015__sp_Q9LU36_4CL4_ARATH |
| BAampscaffold_40141690 | Rosmarinic Acid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| BAampscaffold_40148890 | Rosmarinic Acid | 4CL | low | borderline | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| BAampscaffold_50155680 | Rosmarinic Acid | 4CL | low | borderline | 4CL__00019__sp_Q9SMT7_4CLLA_ARATH |
| BAampscaffold_50160000 | Rosmarinic Acid | 4CL | medium | pass | 4CL__00019__sp_Q9SMT7_4CLLA_ARATH |
| BAampscaffold_60192530 | Rosmarinic Acid | 4CL | low | borderline | 4CL__00015__sp_Q9LU36_4CL4_ARATH |
| BAampscaffold_60200070 | Rosmarinic Acid | 4CL | medium | pass | 4CL__00012__sp_Q84P21_4CLL5_ARATH |
| BAampscaffold_60200540 | Rosmarinic Acid | 4CL | medium | pass | 4CL__00012__sp_Q84P21_4CLL5_ARATH |
| BAampscaffold_70203430 | Rosmarinic Acid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| BAampscaffold_80226300 | Rosmarinic Acid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| BAampscaffold_90235870 | Rosmarinic Acid | 4CL | medium | pass | 4CL__00004__sp_O24146_4CL2_TOBAC |
| BAampscaffold_90238060 | Rosmarinic Acid | 4CL | medium | pass | 4CL__00019__sp_Q9SMT7_4CLLA_ARATH |
| BAampscaffold_90239060 | Rosmarinic Acid | 4CL | low | borderline | 4CL__00018__sp_Q9S777_4CL3_ARATH |
| BAampscaffold_90241240 | Rosmarinic Acid | 4CL | low | borderline | 4CL__00006__sp_P17814_4CL1_ORYSJ |