PlantSME Plant secondary metabolism enzyme database

Barbula amplexifolia (barbula_amplexifolia)

Imported from atlas release summary for Barbula amplexifolia.

691
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 180 12 POD (89) View species results
Terpenoid pathway 152 19 BAHD (64) View species results
Alkaloid pathway 132 19 PYKS (28) View species results
Flavonoid pathway 107 11 PAL (27) View species results
Rosmarinic acid pathway 81 7 PAL (27) View species results
Steroid pathway 39 12 CAS (13) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 604 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 113 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: C4H
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Gene Pathway Family Confidence Status
BAampscaffold_20116660 Rosmarinic Acid C4H low borderline
BAampscaffold_20116980 Rosmarinic Acid C4H low borderline
BAampscaffold_20117340 Rosmarinic Acid C4H low borderline
BAampscaffold_30123320 Rosmarinic Acid C4H low borderline
BAampscaffold_30125150 Rosmarinic Acid C4H low borderline
BAampscaffold_30125350 Rosmarinic Acid C4H low borderline
BAampscaffold_30125910 Rosmarinic Acid C4H low borderline
BAampscaffold_30126360 Rosmarinic Acid C4H low borderline
BAampscaffold_30130020 Rosmarinic Acid C4H low borderline
BAampscaffold_30134640 Rosmarinic Acid C4H medium pass
BAampscaffold_30136180 Rosmarinic Acid C4H low borderline
BAampscaffold_30136620 Rosmarinic Acid C4H low borderline
BAampscaffold_30136790 Rosmarinic Acid C4H low borderline
BAampscaffold_40140690 Rosmarinic Acid C4H medium pass
BAampscaffold_40140850 Rosmarinic Acid C4H medium pass
BAampscaffold_40141260 Rosmarinic Acid C4H low borderline
BAampscaffold_40152860 Rosmarinic Acid C4H low borderline
BAampscaffold_40153210 Rosmarinic Acid C4H medium pass
BAampscaffold_50154520 Rosmarinic Acid C4H low borderline
BAampscaffold_50155170 Rosmarinic Acid C4H low borderline
BAampscaffold_50162150 Rosmarinic Acid C4H low borderline
BAampscaffold_50165700 Rosmarinic Acid C4H low borderline
BAampscaffold_50166970 Rosmarinic Acid C4H low borderline
BAampscaffold_50166980 Rosmarinic Acid C4H low borderline
BAampscaffold_50171560 Rosmarinic Acid C4H medium pass
BAampscaffold_50171570 Rosmarinic Acid C4H low borderline
BAampscaffold_50173870 Rosmarinic Acid C4H low borderline
BAampscaffold_60180940 Rosmarinic Acid C4H medium pass
BAampscaffold_60186040 Rosmarinic Acid C4H low borderline
BAampscaffold_60188730 Rosmarinic Acid C4H low borderline
BAampscaffold_60198730 Rosmarinic Acid C4H medium pass
BAampscaffold_70205500 Rosmarinic Acid C4H medium pass
BAampscaffold_70206190 Rosmarinic Acid C4H low borderline
BAampscaffold_70206260 Rosmarinic Acid C4H medium pass
BAampscaffold_70206580 Rosmarinic Acid C4H low borderline
BAampscaffold_70208190 Rosmarinic Acid C4H low borderline
BAampscaffold_70208960 Rosmarinic Acid C4H low borderline
BAampscaffold_70209820 Rosmarinic Acid C4H low borderline
BAampscaffold_80221640 Rosmarinic Acid C4H low borderline
BAampscaffold_80221740 Rosmarinic Acid C4H low borderline
BAampscaffold_80221890 Rosmarinic Acid C4H low borderline
BAampscaffold_80226330 Rosmarinic Acid C4H low borderline
BAampscaffold_80228770 Rosmarinic Acid C4H low borderline
BAampscaffold_80231190 Rosmarinic Acid C4H medium pass
BAampscaffold_80231260 Rosmarinic Acid C4H low borderline
BAampscaffold_80232150 Rosmarinic Acid C4H low borderline
BAampscaffold_80232270 Rosmarinic Acid C4H low borderline
BAampscaffold_80233990 Rosmarinic Acid C4H low borderline
BAampscaffold_90237660 Rosmarinic Acid C4H low borderline
BAampscaffold_90245100 Rosmarinic Acid C4H low borderline