PlantSME Plant secondary metabolism enzyme database

Barbula amplexifolia (barbula_amplexifolia)

Imported from atlas release summary for Barbula amplexifolia.

691
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 180 12 POD (89) View species results
Terpenoid pathway 152 19 BAHD (64) View species results
Alkaloid pathway 132 19 PYKS (28) View species results
Flavonoid pathway 107 11 PAL (27) View species results
Rosmarinic acid pathway 81 7 PAL (27) View species results
Steroid pathway 39 12 CAS (13) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 604 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 113 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PAL
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Gene Pathway Family Confidence Status Best Target
BAampscaffold_90243520 Phenylpropanoid PAL medium pass PAL__00009__sp_Q9SS45_PAL4_ARATH
BAampscaffold_90243530 Phenylpropanoid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
BAampscaffold_90243560 Phenylpropanoid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
BAampscaffold_90243580 Phenylpropanoid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
BAampscaffold_100011790 Rosmarinic Acid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
BAampscaffold_100019130 Rosmarinic Acid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
BAampscaffold_100023310 Rosmarinic Acid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
BAampscaffold_100023340 Rosmarinic Acid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
BAampscaffold_100023370 Rosmarinic Acid PAL high pass PAL__00003__sp_P45724_PAL2_ARATH
BAampscaffold_100023390 Rosmarinic Acid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
BAampscaffold_100030090 Rosmarinic Acid PAL medium pass PAL__00009__sp_Q9SS45_PAL4_ARATH
BAampscaffold_100030100 Rosmarinic Acid PAL high pass PAL__00003__sp_P45724_PAL2_ARATH
BAampscaffold_100030130 Rosmarinic Acid PAL medium pass PAL__00009__sp_Q9SS45_PAL4_ARATH
BAampscaffold_100030140 Rosmarinic Acid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
BAampscaffold_100030220 Rosmarinic Acid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
BAampscaffold_100030300 Rosmarinic Acid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
BAampscaffold_130072330 Rosmarinic Acid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
BAampscaffold_20115090 Rosmarinic Acid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
BAampscaffold_20118280 Rosmarinic Acid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
BAampscaffold_20118320 Rosmarinic Acid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
BAampscaffold_40140830 Rosmarinic Acid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
BAampscaffold_40145860 Rosmarinic Acid PAL medium pass PAL__00009__sp_Q9SS45_PAL4_ARATH
BAampscaffold_40145870 Rosmarinic Acid PAL high pass PAL__00003__sp_P45724_PAL2_ARATH
BAampscaffold_40145890 Rosmarinic Acid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
BAampscaffold_60191010 Rosmarinic Acid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
BAampscaffold_70218670 Rosmarinic Acid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
BAampscaffold_90243510 Rosmarinic Acid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
BAampscaffold_90243520 Rosmarinic Acid PAL medium pass PAL__00009__sp_Q9SS45_PAL4_ARATH
BAampscaffold_90243530 Rosmarinic Acid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
BAampscaffold_90243560 Rosmarinic Acid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
BAampscaffold_90243580 Rosmarinic Acid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH