PlantSME Plant secondary metabolism enzyme database

Barbula amplexifolia (barbula_amplexifolia)

Imported from atlas release summary for Barbula amplexifolia.

691
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 180 12 POD (89) View species results
Terpenoid pathway 152 19 BAHD (64) View species results
Alkaloid pathway 132 19 PYKS (28) View species results
Flavonoid pathway 107 11 PAL (27) View species results
Rosmarinic acid pathway 81 7 PAL (27) View species results
Steroid pathway 39 12 CAS (13) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 604 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 113 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
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Gene Pathway Family Confidence Status
BAampscaffold_100015100 Rosmarinic Acid 4CL medium pass
BAampscaffold_100028880 Rosmarinic Acid 4CL medium pass
BAampscaffold_110041740 Rosmarinic Acid 4CL low borderline
BAampscaffold_120049270 Rosmarinic Acid 4CL medium pass
BAampscaffold_120053950 Rosmarinic Acid 4CL medium pass
BAampscaffold_120057880 Rosmarinic Acid 4CL low borderline
BAampscaffold_130062680 Rosmarinic Acid 4CL low borderline
BAampscaffold_20094820 Rosmarinic Acid 4CL medium pass
BAampscaffold_20095690 Rosmarinic Acid 4CL medium pass
BAampscaffold_30123630 Rosmarinic Acid 4CL medium pass
BAampscaffold_40138600 Rosmarinic Acid 4CL low borderline
BAampscaffold_40141690 Rosmarinic Acid 4CL medium pass
BAampscaffold_40148890 Rosmarinic Acid 4CL low borderline
BAampscaffold_50155680 Rosmarinic Acid 4CL low borderline
BAampscaffold_50160000 Rosmarinic Acid 4CL medium pass
BAampscaffold_60192530 Rosmarinic Acid 4CL low borderline
BAampscaffold_60200070 Rosmarinic Acid 4CL medium pass
BAampscaffold_60200540 Rosmarinic Acid 4CL medium pass
BAampscaffold_70203430 Rosmarinic Acid 4CL medium pass
BAampscaffold_80226300 Rosmarinic Acid 4CL medium pass
BAampscaffold_90235870 Rosmarinic Acid 4CL medium pass
BAampscaffold_90238060 Rosmarinic Acid 4CL medium pass
BAampscaffold_90239060 Rosmarinic Acid 4CL low borderline
BAampscaffold_90241240 Rosmarinic Acid 4CL low borderline
BAampscaffold_10000340 Rosmarinic Acid C4H medium pass
BAampscaffold_100010190 Rosmarinic Acid C4H low borderline
BAampscaffold_100012650 Rosmarinic Acid C4H low borderline
BAampscaffold_100014290 Rosmarinic Acid C4H low borderline
BAampscaffold_100025770 Rosmarinic Acid C4H low borderline
BAampscaffold_110035920 Rosmarinic Acid C4H medium pass
BAampscaffold_110036660 Rosmarinic Acid C4H low borderline
BAampscaffold_110039800 Rosmarinic Acid C4H medium pass
BAampscaffold_110039940 Rosmarinic Acid C4H medium pass
BAampscaffold_110039950 Rosmarinic Acid C4H medium pass
BAampscaffold_110040220 Rosmarinic Acid C4H low borderline
BAampscaffold_110041610 Rosmarinic Acid C4H low borderline
BAampscaffold_110042880 Rosmarinic Acid C4H medium pass
BAampscaffold_120046170 Rosmarinic Acid C4H low borderline
BAampscaffold_120046900 Rosmarinic Acid C4H low borderline
BAampscaffold_120048320 Rosmarinic Acid C4H low borderline
BAampscaffold_120049200 Rosmarinic Acid C4H low borderline
BAampscaffold_120049310 Rosmarinic Acid C4H low borderline
BAampscaffold_120049760 Rosmarinic Acid C4H low borderline
BAampscaffold_120057840 Rosmarinic Acid C4H low borderline
BAampscaffold_120058100 Rosmarinic Acid C4H low borderline
BAampscaffold_130062470 Rosmarinic Acid C4H low borderline
BAampscaffold_130064470 Rosmarinic Acid C4H low borderline
BAampscaffold_130064730 Rosmarinic Acid C4H low borderline
BAampscaffold_130066360 Rosmarinic Acid C4H low borderline
BAampscaffold_130067430 Rosmarinic Acid C4H medium pass