PlantSME Plant secondary metabolism enzyme database

Barbula amplexifolia (barbula_amplexifolia)

Imported from atlas release summary for Barbula amplexifolia.

871
Candidate Protein Records
691
Pathway-Level Records
1635
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Phenylpropanoid pathway 180 12 POD (89) View species results
Terpenoid pathway 152 19 BAHD (64) View species results
Alkaloid pathway 132 19 PYKS (28) View species results
Flavonoid pathway 107 11 PAL (27) View species results
Rosmarinic acid pathway 81 7 PAL (27) View species results
Steroid pathway 39 12 CAS (13) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 604 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 113 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
BAampscaffold_90247900 Phenylpropanoid C3'H/CYP98A low borderline
BAampscaffold_90248200 Phenylpropanoid C3'H/CYP98A low borderline
BAampscaffold_110039940 Phenylpropanoid C4H/CYP73A medium borderline
BAampscaffold_20114560 Phenylpropanoid C4H/CYP73A low borderline
BAampscaffold_30123320 Phenylpropanoid C4H/CYP73A low borderline
BAampscaffold_30126360 Phenylpropanoid C4H/CYP73A low borderline
BAampscaffold_30136620 Phenylpropanoid C4H/CYP73A low borderline
BAampscaffold_50171560 Phenylpropanoid C4H/CYP73A medium pass
BAampscaffold_60188730 Phenylpropanoid C4H/CYP73A medium borderline
BAampscaffold_100015050 Phenylpropanoid CAD medium pass
BAampscaffold_100017590 Phenylpropanoid CAD low borderline
BAampscaffold_100024560 Phenylpropanoid CAD medium pass
BAampscaffold_10005010 Phenylpropanoid CAD low borderline
BAampscaffold_110036560 Phenylpropanoid CAD low borderline
BAampscaffold_120050270 Phenylpropanoid CAD low borderline
BAampscaffold_130068710 Phenylpropanoid CAD low borderline
BAampscaffold_30133700 Phenylpropanoid CAD medium borderline
BAampscaffold_40139750 Phenylpropanoid CAD low borderline
BAampscaffold_60179000 Phenylpropanoid CAD medium borderline
BAampscaffold_70204480 Phenylpropanoid CAD low borderline
BAampscaffold_70210270 Phenylpropanoid CAD medium pass
BAampscaffold_70210280 Phenylpropanoid CAD medium pass
BAampscaffold_70210330 Phenylpropanoid CAD medium pass
BAampscaffold_80224540 Phenylpropanoid CAD low borderline
BAampscaffold_80226990 Phenylpropanoid CAD medium borderline
BAampscaffold_80231750 Phenylpropanoid CAD low borderline
BAampscaffold_80234650 Phenylpropanoid CAD low borderline
BAampscaffold_90241250 Phenylpropanoid CAD medium pass
BAampscaffold_90246860 Phenylpropanoid CAD medium borderline
BAampscaffold_10002370 Phenylpropanoid CCR medium pass
BAampscaffold_110036960 Phenylpropanoid CCR medium borderline
BAampscaffold_130067770 Phenylpropanoid CCR low borderline
BAampscaffold_130069680 Phenylpropanoid CCR medium borderline
BAampscaffold_40140350 Phenylpropanoid CCR low borderline
BAampscaffold_50165850 Phenylpropanoid CCR low borderline
BAampscaffold_50170240 Phenylpropanoid CCR medium borderline
BAampscaffold_60183390 Phenylpropanoid CCR low borderline
BAampscaffold_70204940 Phenylpropanoid CCR low borderline
BAampscaffold_130064110 Phenylpropanoid CCoAOMT medium pass
BAampscaffold_60180170 Phenylpropanoid CCoAOMT medium pass
BAampscaffold_100009940 Phenylpropanoid COMT low borderline
BAampscaffold_100015160 Phenylpropanoid COMT low borderline
BAampscaffold_10004600 Phenylpropanoid COMT medium pass
BAampscaffold_120053380 Phenylpropanoid COMT medium pass
BAampscaffold_20099750 Phenylpropanoid COMT medium pass
BAampscaffold_30133030 Phenylpropanoid COMT medium pass
BAampscaffold_30134940 Phenylpropanoid COMT medium pass
BAampscaffold_60185770 Phenylpropanoid COMT low borderline
BAampscaffold_60188690 Phenylpropanoid COMT medium pass
BAampscaffold_70216370 Phenylpropanoid COMT medium pass