PlantSME Plant secondary metabolism enzyme database

Barbula amplexifolia (barbula_amplexifolia)

Imported from atlas release summary for Barbula amplexifolia.

871
Candidate Protein Records
691
Pathway-Level Records
1635
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Phenylpropanoid pathway 180 12 POD (89) View species results
Terpenoid pathway 152 19 BAHD (64) View species results
Alkaloid pathway 132 19 PYKS (28) View species results
Flavonoid pathway 107 11 PAL (27) View species results
Rosmarinic acid pathway 81 7 PAL (27) View species results
Steroid pathway 39 12 CAS (13) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 604 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 113 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
BAampscaffold_80224090 Phenylpropanoid COMT medium pass
BAampscaffold_80230040 Phenylpropanoid COMT medium pass
BAampscaffold_100009910 Phenylpropanoid CSE medium pass
BAampscaffold_100029100 Phenylpropanoid CSE medium pass
BAampscaffold_120050680 Phenylpropanoid CSE medium pass
BAampscaffold_130075210 Phenylpropanoid CSE medium pass
BAampscaffold_30125010 Phenylpropanoid CSE low borderline
BAampscaffold_40142230 Phenylpropanoid CSE medium pass
BAampscaffold_60194150 Phenylpropanoid CSE medium pass
BAampscaffold_70204890 Phenylpropanoid CSE medium pass
BAampscaffold_90238840 Phenylpropanoid CSE medium pass
BAampscaffold_90240520 Phenylpropanoid CSE medium pass
BAampscaffold_120058100 Phenylpropanoid F5H/CYP84A medium borderline
BAampscaffold_130064470 Phenylpropanoid F5H/CYP84A medium borderline
BAampscaffold_130064730 Phenylpropanoid F5H/CYP84A medium borderline
BAampscaffold_130074290 Phenylpropanoid F5H/CYP84A medium borderline
BAampscaffold_30125150 Phenylpropanoid F5H/CYP84A medium borderline
BAampscaffold_30125910 Phenylpropanoid F5H/CYP84A medium borderline
BAampscaffold_50171570 Phenylpropanoid F5H/CYP84A medium borderline
BAampscaffold_50175510 Phenylpropanoid F5H/CYP84A medium borderline
BAampscaffold_70206260 Phenylpropanoid F5H/CYP84A medium borderline
BAampscaffold_70216480 Phenylpropanoid F5H/CYP84A low borderline
BAampscaffold_10000600 Phenylpropanoid HCT medium pass
BAampscaffold_100030950 Phenylpropanoid HCT low borderline
BAampscaffold_10003530 Phenylpropanoid HCT medium pass
BAampscaffold_110032330 Phenylpropanoid HCT medium pass
BAampscaffold_110032440 Phenylpropanoid HCT medium pass
BAampscaffold_30133850 Phenylpropanoid HCT low borderline
BAampscaffold_40149630 Phenylpropanoid HCT medium pass
BAampscaffold_40149640 Phenylpropanoid HCT medium pass
BAampscaffold_60178180 Phenylpropanoid HCT low borderline
BAampscaffold_60199890 Phenylpropanoid HCT medium pass
BAampscaffold_70213530 Phenylpropanoid HCT medium pass
BAampscaffold_80223490 Phenylpropanoid HCT medium pass
BAampscaffold_100027550 Phenylpropanoid LAC medium pass
BAampscaffold_130071150 Phenylpropanoid LAC low borderline
BAampscaffold_20107300 Phenylpropanoid LAC medium pass
BAampscaffold_20107310 Phenylpropanoid LAC medium pass
BAampscaffold_20116310 Phenylpropanoid LAC medium pass
BAampscaffold_30125000 Phenylpropanoid LAC medium pass
BAampscaffold_30125130 Phenylpropanoid LAC medium pass
BAampscaffold_40143830 Phenylpropanoid LAC medium pass
BAampscaffold_40148270 Phenylpropanoid LAC low borderline
BAampscaffold_100011790 Phenylpropanoid PAL high pass
BAampscaffold_100019130 Phenylpropanoid PAL high pass
BAampscaffold_100023310 Phenylpropanoid PAL high pass
BAampscaffold_100023340 Phenylpropanoid PAL high pass
BAampscaffold_100023370 Phenylpropanoid PAL high pass
BAampscaffold_100023390 Phenylpropanoid PAL high pass
BAampscaffold_100030090 Phenylpropanoid PAL medium pass