PlantSME Plant secondary metabolism enzyme database

Barbula amplexifolia (barbula_amplexifolia)

Imported from atlas release summary for Barbula amplexifolia.

691
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 180 12 POD (89) View species results
Terpenoid pathway 152 19 BAHD (64) View species results
Alkaloid pathway 132 19 PYKS (28) View species results
Flavonoid pathway 107 11 PAL (27) View species results
Rosmarinic acid pathway 81 7 PAL (27) View species results
Steroid pathway 39 12 CAS (13) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 604 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 113 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
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Gene Pathway Family Confidence Status
BAampscaffold_30123210 Flavonoid F3H low borderline
BAampscaffold_30125750 Flavonoid F3H medium borderline
BAampscaffold_30128520 Flavonoid F3H medium pass
BAampscaffold_30129260 Flavonoid F3H medium borderline
BAampscaffold_30132490 Flavonoid F3H medium borderline
BAampscaffold_40148450 Flavonoid F3H medium borderline
BAampscaffold_50157370 Flavonoid F3H medium borderline
BAampscaffold_50160020 Flavonoid F3H medium borderline
BAampscaffold_60183720 Flavonoid F3H medium borderline
BAampscaffold_70207090 Flavonoid F3H medium borderline
BAampscaffold_80220160 Flavonoid F3H medium borderline
BAampscaffold_80225880 Flavonoid F3H medium pass
BAampscaffold_80229850 Flavonoid F3H medium pass
BAampscaffold_90239310 Flavonoid F3H low borderline
BAampscaffold_90245880 Flavonoid F3H medium borderline
BAampscaffold_20095840 Flavonoid FLS low borderline
BAampscaffold_30121970 Flavonoid FLS medium borderline
BAampscaffold_30122000 Flavonoid FLS medium borderline
BAampscaffold_130074290 Flavonoid FNS medium borderline
BAampscaffold_20117260 Flavonoid FNS medium borderline
BAampscaffold_30136180 Flavonoid FNS medium borderline
BAampscaffold_30136630 Flavonoid FNS medium pass
BAampscaffold_50171570 Flavonoid FNS medium borderline
BAampscaffold_80224040 Flavonoid FNS medium borderline
BAampscaffold_90247810 Flavonoid FNS medium pass
BAampscaffold_100017530 Flavonoid IFR low borderline
BAampscaffold_100021910 Flavonoid IFR low borderline
BAampscaffold_100021920 Flavonoid IFR low borderline
BAampscaffold_100022540 Flavonoid IFR low borderline
BAampscaffold_100028980 Flavonoid IFR low borderline
BAampscaffold_100030530 Flavonoid IFR low borderline
BAampscaffold_110034180 Flavonoid IFR low borderline
BAampscaffold_120045980 Flavonoid IFR low borderline
BAampscaffold_120051120 Flavonoid IFR medium pass
BAampscaffold_130067680 Flavonoid IFR low borderline
BAampscaffold_130076540 Flavonoid IFR low borderline
BAampscaffold_20100930 Flavonoid IFR low borderline
BAampscaffold_20115500 Flavonoid IFR low borderline
BAampscaffold_20115800 Flavonoid IFR low borderline
BAampscaffold_20118900 Flavonoid IFR low borderline
BAampscaffold_30121930 Flavonoid IFR low borderline
BAampscaffold_30125420 Flavonoid IFR low borderline
BAampscaffold_40140350 Flavonoid IFR low borderline
BAampscaffold_40141200 Flavonoid IFR low borderline
BAampscaffold_40146340 Flavonoid IFR medium borderline
BAampscaffold_50164940 Flavonoid IFR low borderline
BAampscaffold_50165850 Flavonoid IFR medium pass
BAampscaffold_60178960 Flavonoid IFR high pass
BAampscaffold_60197550 Flavonoid IFR low borderline
BAampscaffold_70208070 Flavonoid IFR low borderline