PlantSME Plant secondary metabolism enzyme database

Barbula amplexifolia (barbula_amplexifolia)

Imported from atlas release summary for Barbula amplexifolia.

691
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 180 12 POD (89) View species results
Terpenoid pathway 152 19 BAHD (64) View species results
Alkaloid pathway 132 19 PYKS (28) View species results
Flavonoid pathway 107 11 PAL (27) View species results
Rosmarinic acid pathway 81 7 PAL (27) View species results
Steroid pathway 39 12 CAS (13) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 604 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 113 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Gene Pathway Family Confidence Status
BAampscaffold_60185890 Alkaloid NMT low borderline
BAampscaffold_60199680 Alkaloid NMT low borderline
BAampscaffold_70213350 Alkaloid NMT medium borderline
BAampscaffold_70214390 Alkaloid NMT low borderline
BAampscaffold_70216370 Alkaloid NMT medium pass
BAampscaffold_80224090 Alkaloid NMT medium borderline
BAampscaffold_80226050 Alkaloid NMT low borderline
BAampscaffold_80231560 Alkaloid NMT low borderline
BAampscaffold_90237840 Alkaloid NMT medium pass
BAampscaffold_90245930 Alkaloid NMT medium pass
BAampscaffold_100012620 Alkaloid PMT medium borderline
BAampscaffold_10003550 Alkaloid PMT medium pass
BAampscaffold_130068400 Alkaloid PMT low borderline
BAampscaffold_130068900 Alkaloid PMT low borderline
BAampscaffold_30133950 Alkaloid PMT medium pass
BAampscaffold_40149630 Alkaloid PMT low borderline
BAampscaffold_40149640 Alkaloid PMT low borderline
BAampscaffold_70213530 Alkaloid PMT medium pass
BAampscaffold_100013980 Alkaloid PYKS medium pass
BAampscaffold_100023320 Alkaloid PYKS medium pass
BAampscaffold_100023350 Alkaloid PYKS high pass
BAampscaffold_100023360 Alkaloid PYKS high pass
BAampscaffold_100023380 Alkaloid PYKS medium pass
BAampscaffold_100030080 Alkaloid PYKS high pass
BAampscaffold_100030110 Alkaloid PYKS high pass
BAampscaffold_100030120 Alkaloid PYKS medium pass
BAampscaffold_100030160 Alkaloid PYKS high pass
BAampscaffold_100030210 Alkaloid PYKS medium pass
BAampscaffold_100030230 Alkaloid PYKS high pass
BAampscaffold_100030290 Alkaloid PYKS medium pass
BAampscaffold_110036110 Alkaloid PYKS high pass
BAampscaffold_110036120 Alkaloid PYKS high pass
BAampscaffold_110036130 Alkaloid PYKS high pass
BAampscaffold_110037850 Alkaloid PYKS medium pass
BAampscaffold_110038300 Alkaloid PYKS high pass
BAampscaffold_110041370 Alkaloid PYKS low borderline
BAampscaffold_120046500 Alkaloid PYKS high pass
BAampscaffold_120052790 Alkaloid PYKS high pass
BAampscaffold_130073500 Alkaloid PYKS low borderline
BAampscaffold_20093010 Alkaloid PYKS low borderline
BAampscaffold_20101320 Alkaloid PYKS low borderline
BAampscaffold_20105330 Alkaloid PYKS medium pass
BAampscaffold_20105340 Alkaloid PYKS high pass
BAampscaffold_40145850 Alkaloid PYKS high pass
BAampscaffold_40145880 Alkaloid PYKS high pass
BAampscaffold_40149200 Alkaloid PYKS low borderline
BAampscaffold_40152210 Alkaloid PYKS low borderline
BAampscaffold_60177540 Alkaloid PYKS high pass
BAampscaffold_60187690 Alkaloid PYKS low borderline
BAampscaffold_70204090 Alkaloid PYKS low borderline