Barbula amplexifolia (barbula_amplexifolia)
Imported from atlas release summary for Barbula amplexifolia.
691
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
691
Candidate Genes
C4H
6.85%
POD
5.63%
C3'H/CYP98A
5.57%
BAHD
5.38%
PAL
4.95%
4CL
4.4%
CYP76
4.16%
NMT
3.61%
Other Families
59.45%
More Families (95)
STR
44
2.69%
IFS
41
2.51%
PYKS
38
2.32%
F3'H/CYP75B
38
2.32%
DWF4/CYP90B1
35
2.14%
F3H
34
2.08%
IFR
33
2.02%
BR6OX2/CYP85A2
32
1.96%
GS
30
1.83%
T3O
27
1.65%
UFGT
27
1.65%
CHS
27
1.65%
UGT
26
1.59%
7DLGT
25
1.53%
CODM/T6ODM
23
1.41%
IO
22
1.35%
CYP71
22
1.35%
SMT1/SMT2/SMT3
21
1.28%
CAD
20
1.22%
G8O/G8H
19
1.16%
TRI/TRII
15
0.92%
CAS
15
0.92%
H6H
14
0.86%
SLS
13
0.8%
T16H
13
0.8%
F3'5'H/CYP75A
13
0.8%
RAS
13
0.8%
HCT
12
0.73%
COMT
12
0.73%
CSE
10
0.61%
F5H/CYP84A
10
0.61%
CYP90D1
10
0.61%
SGD
9
0.55%
CCR
9
0.55%
LAC
9
0.55%
PMT
8
0.49%
7DLH
8
0.49%
ANR
8
0.49%
CPR
8
0.49%
BR6OX1/CYP85A1
8
0.49%
CYP80B1
7
0.43%
8HGO
7
0.43%
COR
7
0.43%
FNS
7
0.43%
SQS/FDFT1
7
0.43%
CPD/CYP90A1
7
0.43%
CNMT
6
0.37%
MPO
6
0.37%
16OMT
6
0.37%
LAMT
6
0.37%
TAT
5
0.31%
SQE
5
0.31%
AACT
5
0.31%
NCS
4
0.24%
TDC
4
0.24%
CHI
4
0.24%
DFR
4
0.24%
ROT3/CYP90C1
4
0.24%
DWF5
4
0.24%
GGPPS
4
0.24%
BBE
3
0.18%
FLS
3
0.18%
DET2
3
0.18%
MVK
3
0.18%
MVD
3
0.18%
ADC
2
0.12%
CYP719
2
0.12%
TYDC_DDC
2
0.12%
6OMT_4OMT_SOMT
2
0.12%
CCoAOMT
2
0.12%
CYP51G1
2
0.12%
DWF1
2
0.12%
HYD1
2
0.12%
SMO1/SMO2
2
0.12%
MDS/IspF
2
0.12%
HMGR
2
0.12%
DXS
2
0.12%
HDS/IspG
2
0.12%
DXR
2
0.12%
HDR/IspH
2
0.12%
MCT/IspD
2
0.12%
FPPS
2
0.12%
XMT_MXMT_DXMT
1
0.06%
ISY
1
0.06%
GES
1
0.06%
ANS/LDOX
1
0.06%
HPPR
1
0.06%
CPI1
1
0.06%
DWF7
1
0.06%
FK
1
0.06%
PMK
1
0.06%
HMGS
1
0.06%
CMK/IspE
1
0.06%
TPS
1
0.06%
IDI
1
0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Phenylpropanoid pathway | 180 | 12 | POD (89) | View species results |
| Terpenoid pathway | 152 | 19 | BAHD (64) | View species results |
| Alkaloid pathway | 132 | 19 | PYKS (28) | View species results |
| Flavonoid pathway | 107 | 11 | PAL (27) | View species results |
| Rosmarinic acid pathway | 81 | 7 | PAL (27) | View species results |
| Steroid pathway | 39 | 12 | CAS (13) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 604 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 113 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
| Gene | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| BAampscaffold_70216580 | Alkaloid | PYKS | low | borderline |
| BAampscaffold_80220550 | Alkaloid | PYKS | low | borderline |
| BAampscaffold_90237880 | Alkaloid | PYKS | high | pass |
| BAampscaffold_90237890 | Alkaloid | PYKS | high | pass |
| BAampscaffold_90237900 | Alkaloid | PYKS | high | pass |
| BAampscaffold_90237910 | Alkaloid | PYKS | high | pass |
| BAampscaffold_110042270 | Alkaloid | SGD | low | borderline |
| BAampscaffold_120048720 | Alkaloid | SGD | medium | pass |
| BAampscaffold_120053350 | Alkaloid | SGD | medium | pass |
| BAampscaffold_20104120 | Alkaloid | SGD | low | borderline |
| BAampscaffold_20106170 | Alkaloid | SGD | low | borderline |
| BAampscaffold_40145260 | Alkaloid | SGD | medium | pass |
| BAampscaffold_40150450 | Alkaloid | SGD | medium | pass |
| BAampscaffold_50165620 | Alkaloid | SGD | low | borderline |
| BAampscaffold_50172300 | Alkaloid | SGD | medium | pass |
| BAampscaffold_100025770 | Alkaloid | SLS | medium | borderline |
| BAampscaffold_120048320 | Alkaloid | SLS | medium | borderline |
| BAampscaffold_120052920 | Alkaloid | SLS | medium | borderline |
| BAampscaffold_20114560 | Alkaloid | SLS | medium | borderline |
| BAampscaffold_20117260 | Alkaloid | SLS | medium | borderline |
| BAampscaffold_20117340 | Alkaloid | SLS | medium | borderline |
| BAampscaffold_70206190 | Alkaloid | SLS | medium | borderline |
| BAampscaffold_70209820 | Alkaloid | SLS | medium | borderline |
| BAampscaffold_80224040 | Alkaloid | SLS | medium | borderline |
| BAampscaffold_80233990 | Alkaloid | SLS | medium | borderline |
| BAampscaffold_90237660 | Alkaloid | SLS | medium | borderline |
| BAampscaffold_90245640 | Alkaloid | SLS | medium | borderline |
| BAampscaffold_90247240 | Alkaloid | SLS | medium | borderline |
| BAampscaffold_100013620 | Alkaloid | STR | low | borderline |
| BAampscaffold_100019300 | Alkaloid | STR | low | borderline |
| BAampscaffold_100026720 | Alkaloid | STR | medium | pass |
| BAampscaffold_10003250 | Alkaloid | STR | medium | pass |
| BAampscaffold_10008160 | Alkaloid | STR | low | borderline |
| BAampscaffold_10008190 | Alkaloid | STR | low | borderline |
| BAampscaffold_110040410 | Alkaloid | STR | medium | pass |
| BAampscaffold_110043970 | Alkaloid | STR | medium | pass |
| BAampscaffold_120046860 | Alkaloid | STR | low | borderline |
| BAampscaffold_120052580 | Alkaloid | STR | low | borderline |
| BAampscaffold_120057240 | Alkaloid | STR | low | borderline |
| BAampscaffold_120058820 | Alkaloid | STR | low | borderline |
| BAampscaffold_120060770 | Alkaloid | STR | low | borderline |
| BAampscaffold_130067810 | Alkaloid | STR | medium | pass |
| BAampscaffold_20092710 | Alkaloid | STR | low | borderline |
| BAampscaffold_20094300 | Alkaloid | STR | medium | pass |
| BAampscaffold_20100510 | Alkaloid | STR | low | borderline |
| BAampscaffold_20103710 | Alkaloid | STR | low | borderline |
| BAampscaffold_30121630 | Alkaloid | STR | low | borderline |
| BAampscaffold_30128740 | Alkaloid | STR | low | borderline |
| BAampscaffold_30129250 | Alkaloid | STR | low | borderline |
| BAampscaffold_30133000 | Alkaloid | STR | low | borderline |