Barbula amplexifolia (barbula_amplexifolia)
Imported from atlas release summary for Barbula amplexifolia.
871
Candidate Protein Records
691
Pathway-Level Records
1635
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
1635
Family-Level Calls
C4H
6.85%
POD
5.63%
C3'H/CYP98A
5.57%
BAHD
5.38%
PAL
4.95%
4CL
4.4%
CYP76
4.16%
NMT
3.61%
Other Families
59.45%
More Families (95)
STR
44
2.69%
IFS
41
2.51%
PYKS
38
2.32%
F3'H/CYP75B
38
2.32%
DWF4/CYP90B1
35
2.14%
F3H
34
2.08%
IFR
33
2.02%
BR6OX2/CYP85A2
32
1.96%
GS
30
1.83%
T3O
27
1.65%
UFGT
27
1.65%
CHS
27
1.65%
UGT
26
1.59%
7DLGT
25
1.53%
CODM/T6ODM
23
1.41%
IO
22
1.35%
CYP71
22
1.35%
SMT1/SMT2/SMT3
21
1.28%
CAD
20
1.22%
G8O/G8H
19
1.16%
TRI/TRII
15
0.92%
CAS
15
0.92%
H6H
14
0.86%
SLS
13
0.8%
T16H
13
0.8%
F3'5'H/CYP75A
13
0.8%
RAS
13
0.8%
HCT
12
0.73%
COMT
12
0.73%
CSE
10
0.61%
F5H/CYP84A
10
0.61%
CYP90D1
10
0.61%
SGD
9
0.55%
CCR
9
0.55%
LAC
9
0.55%
PMT
8
0.49%
7DLH
8
0.49%
ANR
8
0.49%
CPR
8
0.49%
BR6OX1/CYP85A1
8
0.49%
CYP80B1
7
0.43%
8HGO
7
0.43%
COR
7
0.43%
FNS
7
0.43%
SQS/FDFT1
7
0.43%
CPD/CYP90A1
7
0.43%
CNMT
6
0.37%
MPO
6
0.37%
16OMT
6
0.37%
LAMT
6
0.37%
TAT
5
0.31%
SQE
5
0.31%
AACT
5
0.31%
NCS
4
0.24%
TDC
4
0.24%
CHI
4
0.24%
DFR
4
0.24%
ROT3/CYP90C1
4
0.24%
DWF5
4
0.24%
GGPPS
4
0.24%
BBE
3
0.18%
FLS
3
0.18%
DET2
3
0.18%
MVK
3
0.18%
MVD
3
0.18%
ADC
2
0.12%
CYP719
2
0.12%
TYDC_DDC
2
0.12%
6OMT_4OMT_SOMT
2
0.12%
CCoAOMT
2
0.12%
CYP51G1
2
0.12%
DWF1
2
0.12%
HYD1
2
0.12%
SMO1/SMO2
2
0.12%
MDS/IspF
2
0.12%
HMGR
2
0.12%
DXS
2
0.12%
HDS/IspG
2
0.12%
DXR
2
0.12%
HDR/IspH
2
0.12%
MCT/IspD
2
0.12%
FPPS
2
0.12%
XMT_MXMT_DXMT
1
0.06%
ISY
1
0.06%
GES
1
0.06%
ANS/LDOX
1
0.06%
HPPR
1
0.06%
CPI1
1
0.06%
DWF7
1
0.06%
FK
1
0.06%
PMK
1
0.06%
HMGS
1
0.06%
CMK/IspE
1
0.06%
TPS
1
0.06%
IDI
1
0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Phenylpropanoid pathway | 180 | 12 | POD (89) | View species results |
| Terpenoid pathway | 152 | 19 | BAHD (64) | View species results |
| Alkaloid pathway | 132 | 19 | PYKS (28) | View species results |
| Flavonoid pathway | 107 | 11 | PAL (27) | View species results |
| Rosmarinic acid pathway | 81 | 7 | PAL (27) | View species results |
| Steroid pathway | 39 | 12 | CAS (13) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 604 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 113 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
| Protein/Isoform Record | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| BAampscaffold_30135500 | Alkaloid | STR | medium | pass |
| BAampscaffold_30137120 | Alkaloid | STR | low | borderline |
| BAampscaffold_40143470 | Alkaloid | STR | low | borderline |
| BAampscaffold_40149140 | Alkaloid | STR | low | borderline |
| BAampscaffold_40152520 | Alkaloid | STR | medium | pass |
| BAampscaffold_50155750 | Alkaloid | STR | low | borderline |
| BAampscaffold_50155760 | Alkaloid | STR | low | borderline |
| BAampscaffold_50158840 | Alkaloid | STR | low | borderline |
| BAampscaffold_50170660 | Alkaloid | STR | medium | pass |
| BAampscaffold_60181580 | Alkaloid | STR | low | borderline |
| BAampscaffold_60181810 | Alkaloid | STR | low | borderline |
| BAampscaffold_60183060 | Alkaloid | STR | medium | pass |
| BAampscaffold_60199180 | Alkaloid | STR | low | borderline |
| BAampscaffold_70215490 | Alkaloid | STR | low | borderline |
| BAampscaffold_70217560 | Alkaloid | STR | low | borderline |
| BAampscaffold_70217570 | Alkaloid | STR | medium | pass |
| BAampscaffold_70219050 | Alkaloid | STR | low | borderline |
| BAampscaffold_80220340 | Alkaloid | STR | low | borderline |
| BAampscaffold_80224270 | Alkaloid | STR | low | borderline |
| BAampscaffold_90237750 | Alkaloid | STR | low | borderline |
| BAampscaffold_90237760 | Alkaloid | STR | low | borderline |
| BAampscaffold_90240190 | Alkaloid | STR | low | borderline |
| BAampscaffold_110035920 | Alkaloid | T16H | medium | borderline |
| BAampscaffold_120052760 | Alkaloid | T16H | low | borderline |
| BAampscaffold_130064470 | Alkaloid | T16H | medium | borderline |
| BAampscaffold_130074290 | Alkaloid | T16H | medium | borderline |
| BAampscaffold_20097450 | Alkaloid | T16H | medium | borderline |
| BAampscaffold_20115170 | Alkaloid | T16H | medium | borderline |
| BAampscaffold_30125350 | Alkaloid | T16H | medium | borderline |
| BAampscaffold_30134640 | Alkaloid | T16H | medium | borderline |
| BAampscaffold_30136620 | Alkaloid | T16H | medium | borderline |
| BAampscaffold_40153210 | Alkaloid | T16H | medium | borderline |
| BAampscaffold_50162150 | Alkaloid | T16H | medium | borderline |
| BAampscaffold_50165700 | Alkaloid | T16H | medium | borderline |
| BAampscaffold_50175510 | Alkaloid | T16H | medium | borderline |
| BAampscaffold_100010190 | Alkaloid | T3O | medium | borderline |
| BAampscaffold_10008300 | Alkaloid | T3O | low | borderline |
| BAampscaffold_110039800 | Alkaloid | T3O | medium | borderline |
| BAampscaffold_110039950 | Alkaloid | T3O | medium | borderline |
| BAampscaffold_110041610 | Alkaloid | T3O | medium | pass |
| BAampscaffold_110042880 | Alkaloid | T3O | medium | borderline |
| BAampscaffold_120049200 | Alkaloid | T3O | medium | pass |
| BAampscaffold_120049310 | Alkaloid | T3O | medium | pass |
| BAampscaffold_120049760 | Alkaloid | T3O | medium | borderline |
| BAampscaffold_130066360 | Alkaloid | T3O | medium | pass |
| BAampscaffold_130067430 | Alkaloid | T3O | medium | borderline |
| BAampscaffold_160087470 | Alkaloid | T3O | medium | borderline |
| BAampscaffold_20092800 | Alkaloid | T3O | medium | pass |
| BAampscaffold_30136790 | Alkaloid | T3O | medium | pass |
| BAampscaffold_40141260 | Alkaloid | T3O | medium | pass |