PlantSME Plant secondary metabolism enzyme database

Barbula amplexifolia (barbula_amplexifolia)

Imported from atlas release summary for Barbula amplexifolia.

871
Candidate Protein Records
691
Pathway-Level Records
1635
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Phenylpropanoid pathway 180 12 POD (89) View species results
Terpenoid pathway 152 19 BAHD (64) View species results
Alkaloid pathway 132 19 PYKS (28) View species results
Flavonoid pathway 107 11 PAL (27) View species results
Rosmarinic acid pathway 81 7 PAL (27) View species results
Steroid pathway 39 12 CAS (13) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 604 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 113 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Protein/Isoform Record Pathway Family Confidence Status
BAampscaffold_40149780 Alkaloid T3O medium pass
BAampscaffold_50168840 Alkaloid T3O medium pass
BAampscaffold_50173870 Alkaloid T3O medium pass
BAampscaffold_70205500 Alkaloid T3O medium borderline
BAampscaffold_70208960 Alkaloid T3O medium pass
BAampscaffold_70214510 Alkaloid T3O medium pass
BAampscaffold_80221890 Alkaloid T3O medium pass
BAampscaffold_80228770 Alkaloid T3O medium pass
BAampscaffold_80231260 Alkaloid T3O medium borderline
BAampscaffold_80231670 Alkaloid T3O low borderline
BAampscaffold_90246570 Alkaloid T3O medium borderline
BAampscaffold_90248200 Alkaloid T3O medium pass
BAampscaffold_20107490 Alkaloid TDC low borderline
BAampscaffold_20109360 Alkaloid TDC low borderline
BAampscaffold_60197070 Alkaloid TDC low borderline
BAampscaffold_70202620 Alkaloid TDC low borderline
BAampscaffold_10001390 Alkaloid TRI/TRII medium pass
BAampscaffold_100024520 Alkaloid TRI/TRII medium pass
BAampscaffold_110031720 Alkaloid TRI/TRII medium pass
BAampscaffold_120055270 Alkaloid TRI/TRII medium pass
BAampscaffold_120057290 Alkaloid TRI/TRII medium pass
BAampscaffold_120059070 Alkaloid TRI/TRII medium pass
BAampscaffold_20093990 Alkaloid TRI/TRII medium pass
BAampscaffold_40143740 Alkaloid TRI/TRII low borderline
BAampscaffold_50154940 Alkaloid TRI/TRII medium pass
BAampscaffold_50156210 Alkaloid TRI/TRII medium pass
BAampscaffold_60197560 Alkaloid TRI/TRII low borderline
BAampscaffold_70212690 Alkaloid TRI/TRII low borderline
BAampscaffold_80223300 Alkaloid TRI/TRII low borderline
BAampscaffold_80232180 Alkaloid TRI/TRII low borderline
BAampscaffold_90247010 Alkaloid TRI/TRII medium pass
BAampscaffold_20117270 Alkaloid TYDC_DDC medium borderline
BAampscaffold_60200420 Alkaloid TYDC_DDC medium borderline
BAampscaffold_120057040 Alkaloid XMT_MXMT_DXMT low borderline