PlantSME Plant secondary metabolism enzyme database

Boechera retrofracta (boechera_retrofracta)

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Imported from atlas release summary for Boechera retrofracta.

1221
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 372 19 BAHD (158) View species results
Alkaloid pathway 272 19 SGD (46) View species results
Phenylpropanoid pathway 257 11 POD (121) View species results
Flavonoid pathway 143 8 UFGT (95) View species results
Rosmarinic acid pathway 97 7 C4H (43) View species results
Steroid pathway 80 13 SMT1/SMT2/SMT3 (34) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1239 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 244 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 7DLGT
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Gene Pathway Family Confidence Status
BOERETT00000608 Alkaloid 7DLGT high pass
BOERETT00000798 Alkaloid 7DLGT medium pass
BOERETT00003606 Alkaloid 7DLGT medium pass
BOERETT00005640 Alkaloid 7DLGT medium pass
BOERETT00005642 Alkaloid 7DLGT medium pass
BOERETT00005643 Alkaloid 7DLGT high pass
BOERETT00005645 Alkaloid 7DLGT medium pass
BOERETT00005646 Alkaloid 7DLGT low borderline
BOERETT00005838 Alkaloid 7DLGT low borderline
BOERETT00008054 Alkaloid 7DLGT medium pass
BOERETT00009892 Alkaloid 7DLGT low borderline
BOERETT00010652 Alkaloid 7DLGT low borderline
BOERETT00011016 Alkaloid 7DLGT high pass
BOERETT00011358 Alkaloid 7DLGT low borderline
BOERETT00011359 Alkaloid 7DLGT low borderline
BOERETT00011360 Alkaloid 7DLGT medium pass
BOERETT00011375 Alkaloid 7DLGT medium pass
BOERETT00011936 Alkaloid 7DLGT medium pass
BOERETT00013234 Alkaloid 7DLGT low borderline
BOERETT00013235 Alkaloid 7DLGT medium pass
BOERETT00013236 Alkaloid 7DLGT low borderline
BOERETT00013421 Alkaloid 7DLGT low borderline
BOERETT00013422 Alkaloid 7DLGT medium pass
BOERETT00013443 Alkaloid 7DLGT medium pass
BOERETT00013444 Alkaloid 7DLGT medium pass
BOERETT00015713 Alkaloid 7DLGT low borderline
BOERETT00016993 Alkaloid 7DLGT low borderline
BOERETT00017743 Alkaloid 7DLGT low borderline
BOERETT00017747 Alkaloid 7DLGT medium pass
BOERETT00019156 Alkaloid 7DLGT low borderline
BOERETT00019867 Alkaloid 7DLGT medium pass
BOERETT00019868 Alkaloid 7DLGT low borderline
BOERETT00020626 Alkaloid 7DLGT high pass
BOERETT00021456 Alkaloid 7DLGT low borderline
BOERETT00021518 Alkaloid 7DLGT low borderline
BOERETT00021523 Alkaloid 7DLGT low borderline
BOERETT00023107 Alkaloid 7DLGT low borderline
BOERETT00023381 Alkaloid 7DLGT high pass
BOERETT00023382 Alkaloid 7DLGT high pass
BOERETT00023383 Alkaloid 7DLGT high pass
BOERETT00023384 Alkaloid 7DLGT high pass
BOERETT00024172 Alkaloid 7DLGT low borderline
BOERETT00024410 Alkaloid 7DLGT low borderline
BOERETT00026190 Alkaloid 7DLGT low borderline
BOERETT00026191 Alkaloid 7DLGT low borderline
BOERETT00026192 Alkaloid 7DLGT low borderline
BOERETT00026304 Alkaloid 7DLGT low borderline
BOERETT00026457 Alkaloid 7DLGT low borderline
BOERETT00026459 Alkaloid 7DLGT low borderline
BOERETT00027618 Alkaloid 7DLGT medium pass