Boechera retrofracta (boechera_retrofracta)
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Imported from atlas release summary for Boechera retrofracta.
1221
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1221
Candidate Genes
BAHD
6.38%
C3'H/CYP98A
6.2%
C4H
5.95%
POD
4.14%
4CL
3.92%
CYP76
3.89%
IFS
3.77%
UGT
3.49%
Other Families
62.25%
More Families (96)
T3O
104
3.24%
UFGT
103
3.21%
7DLGT
101
3.15%
F3H
87
2.71%
DWF4/CYP90B1
83
2.58%
NMT
78
2.43%
BR6OX2/CYP85A2
72
2.24%
F3'H/CYP75B
62
1.93%
CODM/T6ODM
60
1.87%
STR
59
1.84%
SMT1/SMT2/SMT3
59
1.84%
CYP71
58
1.81%
SGD
50
1.56%
TRI/TRII
48
1.49%
CAD
39
1.21%
CSE
36
1.12%
CAS
36
1.12%
H6H
35
1.09%
SLS
32
1.0%
T16H
32
1.0%
IFR
31
0.97%
TPS
29
0.9%
BBE
28
0.87%
PYKS
28
0.87%
GES
26
0.81%
COMT
25
0.78%
FNS
24
0.75%
LAC
24
0.75%
LAMT
22
0.69%
ANR
22
0.69%
CYP90D1
21
0.65%
RAS
20
0.62%
GS
19
0.59%
CCR
19
0.59%
HCT
19
0.59%
TAT
19
0.59%
16OMT
18
0.56%
G8O/G8H
17
0.53%
IO
17
0.53%
F5H/CYP84A
17
0.53%
CPD/CYP90A1
17
0.53%
F3'5'H/CYP75A
15
0.47%
PAL
15
0.47%
CYP51G1
13
0.4%
8HGO
12
0.37%
PMT
12
0.37%
NCS
11
0.34%
ANS/LDOX
11
0.34%
FPPS
11
0.34%
7DLH
10
0.31%
CNMT
10
0.31%
GGPPS
10
0.31%
COR
9
0.28%
CYP719
9
0.28%
SQE
8
0.25%
MPO
7
0.22%
CCoAOMT
7
0.22%
ROT3/CYP90C1
7
0.22%
BR6OX1/CYP85A1
7
0.22%
CYP80F1
6
0.19%
CPR
6
0.19%
AACT
6
0.19%
MDS/IspF
6
0.19%
CHI
5
0.16%
DFR
5
0.16%
SQS/FDFT1
5
0.16%
DET2
5
0.16%
PMK
5
0.16%
DXS
5
0.16%
CYP80B1
4
0.12%
CHS
4
0.12%
HPPR
4
0.12%
DWF7
4
0.12%
MVK
4
0.12%
MVD
4
0.12%
MCT/IspD
4
0.12%
XMT_MXMT_DXMT
3
0.09%
ADC
3
0.09%
SMO1/SMO2
3
0.09%
CMK/IspE
3
0.09%
TDC
2
0.06%
TYDC_DDC
2
0.06%
ISY
2
0.06%
FLS
2
0.06%
DWF1
2
0.06%
HMGR
2
0.06%
HDS/IspG
2
0.06%
DXR
2
0.06%
IDI
2
0.06%
6OMT_4OMT_SOMT
1
0.03%
HYD1
1
0.03%
DWF5
1
0.03%
FK
1
0.03%
CPI1
1
0.03%
HMGS
1
0.03%
HDR/IspH
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 372 | 19 | BAHD (158) | View species results |
| Alkaloid pathway | 272 | 19 | SGD (46) | View species results |
| Phenylpropanoid pathway | 257 | 11 | POD (121) | View species results |
| Flavonoid pathway | 143 | 8 | UFGT (95) | View species results |
| Rosmarinic acid pathway | 97 | 7 | C4H (43) | View species results |
| Steroid pathway | 80 | 13 | SMT1/SMT2/SMT3 (34) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1239 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 244 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| BOERETT00000538 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BOERETT00008363 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BOERETT00008589 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BOERETT00008775 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BOERETT00009637 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| BOERETT00009908 | Alkaloid | STR | medium | pass | STR__00002__sp_P68175_STSY_RAUSE |
| BOERETT00009909 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| BOERETT00009910 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| BOERETT00009911 | Alkaloid | STR | medium | pass | STR__00002__sp_P68175_STSY_RAUSE |
| BOERETT00012095 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BOERETT00013081 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| BOERETT00014025 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| BOERETT00019902 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BOERETT00020388 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BOERETT00023467 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BOERETT00024252 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| BOERETT00026504 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BOERETT00026507 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| BOERETT00028075 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BOERETT00028454 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BOERETT00028997 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BOERETT00030702 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BOERETT00032093 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BOERETT00033671 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BOERETT00033769 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| BOERETT00033770 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| BOERETT00033772 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| BOERETT00034823 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BOERETT00035903 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BOERETT00037516 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BOERETT00037560 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BOERETT00037815 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BOERETT00037915 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BOERETT00039046 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BOERETT00040233 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| BOERETT00040236 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| BOERETT00040239 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| BOERETT00040242 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| BOERETT00043360 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BOERETT00045574 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BOERETT00045784 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BOERETT00047271 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| BOERETT00047436 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| BOERETT00047437 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| BOERETT00047489 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BOERETT00049349 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| BOERETT00049904 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BOERETT00052251 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| BOERETT00052252 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| BOERETT00052253 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |