PlantSME Plant secondary metabolism enzyme database

Boechera retrofracta (boechera_retrofracta)

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Imported from atlas release summary for Boechera retrofracta.

1221
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 372 19 BAHD (158) View species results
Alkaloid pathway 272 19 SGD (46) View species results
Phenylpropanoid pathway 257 11 POD (121) View species results
Flavonoid pathway 143 8 UFGT (95) View species results
Rosmarinic acid pathway 97 7 C4H (43) View species results
Steroid pathway 80 13 SMT1/SMT2/SMT3 (34) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1239 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 244 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: LAC
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Gene Pathway Family Confidence Status Best Target
BOERETT00010144 Phenylpropanoid LAC low borderline LAC__00001__sp_O80434_LAC4_ARATH
BOERETT00013265 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
BOERETT00015475 Phenylpropanoid LAC medium pass LAC__00004__sp_Q9LFD2_LAC8_ARATH
BOERETT00020633 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
BOERETT00022922 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
BOERETT00022933 Phenylpropanoid LAC medium pass LAC__00004__sp_Q9LFD2_LAC8_ARATH
BOERETT00022936 Phenylpropanoid LAC medium pass LAC__00004__sp_Q9LFD2_LAC8_ARATH
BOERETT00023074 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
BOERETT00023340 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
BOERETT00023532 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
BOERETT00023779 Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH
BOERETT00025849 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
BOERETT00035674 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
BOERETT00035816 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
BOERETT00036626 Phenylpropanoid LAC low borderline LAC__00004__sp_Q9LFD2_LAC8_ARATH
BOERETT00037840 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
BOERETT00044057 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
BOERETT00047321 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
BOERETT00052411 Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH
BOERETT00053756 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
BOERETT00055829 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
BOERETT00055992 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
BOERETT00061018 Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH
BOERETT00061019 Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH