PlantSME Plant secondary metabolism enzyme database

Boechera retrofracta (boechera_retrofracta)

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Imported from atlas release summary for Boechera retrofracta.

1221
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 30.47% Alkaloid pathway 22.28% Phenylpropanoid pathway 21.05% Flavonoid pathway 11.71% Rosmarinic acid pathway 7.94% Steroid pathway 6.55%
Family Distribution
BAHD 6.38% C3'H/CYP98A 6.2% C4H 5.95% POD 4.14% 4CL 3.92% CYP76 3.89% IFS 3.77% UGT 3.49%
Other Families 62.25%
More Families (96)
T3O 104 3.24% UFGT 103 3.21% 7DLGT 101 3.15% F3H 87 2.71% DWF4/CYP90B1 83 2.58% NMT 78 2.43% BR6OX2/CYP85A2 72 2.24% F3'H/CYP75B 62 1.93% CODM/T6ODM 60 1.87% STR 59 1.84% SMT1/SMT2/SMT3 59 1.84% CYP71 58 1.81% SGD 50 1.56% TRI/TRII 48 1.49% CAD 39 1.21% CSE 36 1.12% CAS 36 1.12% H6H 35 1.09% SLS 32 1.0% T16H 32 1.0% IFR 31 0.97% TPS 29 0.9% BBE 28 0.87% PYKS 28 0.87% GES 26 0.81% COMT 25 0.78% FNS 24 0.75% LAC 24 0.75% LAMT 22 0.69% ANR 22 0.69% CYP90D1 21 0.65% RAS 20 0.62% GS 19 0.59% CCR 19 0.59% HCT 19 0.59% TAT 19 0.59% 16OMT 18 0.56% G8O/G8H 17 0.53% IO 17 0.53% F5H/CYP84A 17 0.53% CPD/CYP90A1 17 0.53% F3'5'H/CYP75A 15 0.47% PAL 15 0.47% CYP51G1 13 0.4% 8HGO 12 0.37% PMT 12 0.37% NCS 11 0.34% ANS/LDOX 11 0.34% FPPS 11 0.34% 7DLH 10 0.31% CNMT 10 0.31% GGPPS 10 0.31% COR 9 0.28% CYP719 9 0.28% SQE 8 0.25% MPO 7 0.22% CCoAOMT 7 0.22% ROT3/CYP90C1 7 0.22% BR6OX1/CYP85A1 7 0.22% CYP80F1 6 0.19% CPR 6 0.19% AACT 6 0.19% MDS/IspF 6 0.19% CHI 5 0.16% DFR 5 0.16% SQS/FDFT1 5 0.16% DET2 5 0.16% PMK 5 0.16% DXS 5 0.16% CYP80B1 4 0.12% CHS 4 0.12% HPPR 4 0.12% DWF7 4 0.12% MVK 4 0.12% MVD 4 0.12% MCT/IspD 4 0.12% XMT_MXMT_DXMT 3 0.09% ADC 3 0.09% SMO1/SMO2 3 0.09% CMK/IspE 3 0.09% TDC 2 0.06% TYDC_DDC 2 0.06% ISY 2 0.06% FLS 2 0.06% DWF1 2 0.06% HMGR 2 0.06% HDS/IspG 2 0.06% DXR 2 0.06% IDI 2 0.06% 6OMT_4OMT_SOMT 1 0.03% HYD1 1 0.03% DWF5 1 0.03% FK 1 0.03% CPI1 1 0.03% HMGS 1 0.03% HDR/IspH 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 372 19 BAHD (158) View species results
Alkaloid pathway 272 19 SGD (46) View species results
Phenylpropanoid pathway 257 11 POD (121) View species results
Flavonoid pathway 143 8 UFGT (95) View species results
Rosmarinic acid pathway 97 7 C4H (43) View species results
Steroid pathway 80 13 SMT1/SMT2/SMT3 (34) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1239 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 244 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: ANS/LDOX
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Gene Pathway Family Confidence Status Best Target
BOERETT00012303 Flavonoid ANS/LDOX medium borderline ANS_LDOX__00004__sp_O80449_JOX4_ARATH
BOERETT00013308 Flavonoid ANS/LDOX medium pass ANS_LDOX__00001__sp_A0A2R6PI27_LDOX_ACTCC
BOERETT00019060 Flavonoid ANS/LDOX medium borderline ANS_LDOX__00002__sp_A2WQ39_ANS1_ORYSI
BOERETT00030775 Flavonoid ANS/LDOX medium borderline ANS_LDOX__00004__sp_O80449_JOX4_ARATH
BOERETT00032150 Flavonoid ANS/LDOX medium borderline ANS_LDOX__00004__sp_O80449_JOX4_ARATH
BOERETT00035762 Flavonoid ANS/LDOX low borderline ANS_LDOX__00001__sp_A0A2R6PI27_LDOX_ACTCC
BOERETT00040390 Flavonoid ANS/LDOX medium pass ANS_LDOX__00004__sp_O80449_JOX4_ARATH
BOERETT00049354 Flavonoid ANS/LDOX medium borderline ANS_LDOX__00004__sp_O80449_JOX4_ARATH
BOERETT00054265 Flavonoid ANS/LDOX medium borderline ANS_LDOX__00004__sp_O80449_JOX4_ARATH
BOERETT00061109 Flavonoid ANS/LDOX low borderline ANS_LDOX__00001__sp_A0A2R6PI27_LDOX_ACTCC
BOERETT00061111 Flavonoid ANS/LDOX medium borderline ANS_LDOX__00005__sp_Q96323_LDOX_ARATH