Boechera retrofracta (boechera_retrofracta)
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Imported from atlas release summary for Boechera retrofracta.
1221
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1221
Candidate Genes
BAHD
6.38%
C3'H/CYP98A
6.2%
C4H
5.95%
POD
4.14%
4CL
3.92%
CYP76
3.89%
IFS
3.77%
UGT
3.49%
Other Families
62.25%
More Families (96)
T3O
104
3.24%
UFGT
103
3.21%
7DLGT
101
3.15%
F3H
87
2.71%
DWF4/CYP90B1
83
2.58%
NMT
78
2.43%
BR6OX2/CYP85A2
72
2.24%
F3'H/CYP75B
62
1.93%
CODM/T6ODM
60
1.87%
STR
59
1.84%
SMT1/SMT2/SMT3
59
1.84%
CYP71
58
1.81%
SGD
50
1.56%
TRI/TRII
48
1.49%
CAD
39
1.21%
CSE
36
1.12%
CAS
36
1.12%
H6H
35
1.09%
SLS
32
1.0%
T16H
32
1.0%
IFR
31
0.97%
TPS
29
0.9%
BBE
28
0.87%
PYKS
28
0.87%
GES
26
0.81%
COMT
25
0.78%
FNS
24
0.75%
LAC
24
0.75%
LAMT
22
0.69%
ANR
22
0.69%
CYP90D1
21
0.65%
RAS
20
0.62%
GS
19
0.59%
CCR
19
0.59%
HCT
19
0.59%
TAT
19
0.59%
16OMT
18
0.56%
G8O/G8H
17
0.53%
IO
17
0.53%
F5H/CYP84A
17
0.53%
CPD/CYP90A1
17
0.53%
F3'5'H/CYP75A
15
0.47%
PAL
15
0.47%
CYP51G1
13
0.4%
8HGO
12
0.37%
PMT
12
0.37%
NCS
11
0.34%
ANS/LDOX
11
0.34%
FPPS
11
0.34%
7DLH
10
0.31%
CNMT
10
0.31%
GGPPS
10
0.31%
COR
9
0.28%
CYP719
9
0.28%
SQE
8
0.25%
MPO
7
0.22%
CCoAOMT
7
0.22%
ROT3/CYP90C1
7
0.22%
BR6OX1/CYP85A1
7
0.22%
CYP80F1
6
0.19%
CPR
6
0.19%
AACT
6
0.19%
MDS/IspF
6
0.19%
CHI
5
0.16%
DFR
5
0.16%
SQS/FDFT1
5
0.16%
DET2
5
0.16%
PMK
5
0.16%
DXS
5
0.16%
CYP80B1
4
0.12%
CHS
4
0.12%
HPPR
4
0.12%
DWF7
4
0.12%
MVK
4
0.12%
MVD
4
0.12%
MCT/IspD
4
0.12%
XMT_MXMT_DXMT
3
0.09%
ADC
3
0.09%
SMO1/SMO2
3
0.09%
CMK/IspE
3
0.09%
TDC
2
0.06%
TYDC_DDC
2
0.06%
ISY
2
0.06%
FLS
2
0.06%
DWF1
2
0.06%
HMGR
2
0.06%
HDS/IspG
2
0.06%
DXR
2
0.06%
IDI
2
0.06%
6OMT_4OMT_SOMT
1
0.03%
HYD1
1
0.03%
DWF5
1
0.03%
FK
1
0.03%
CPI1
1
0.03%
HMGS
1
0.03%
HDR/IspH
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 372 | 19 | BAHD (158) | View species results |
| Alkaloid pathway | 272 | 19 | SGD (46) | View species results |
| Phenylpropanoid pathway | 257 | 11 | POD (121) | View species results |
| Flavonoid pathway | 143 | 8 | UFGT (95) | View species results |
| Rosmarinic acid pathway | 97 | 7 | C4H (43) | View species results |
| Steroid pathway | 80 | 13 | SMT1/SMT2/SMT3 (34) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1239 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 244 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CYP76
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| BOERETT00026476 | Terpenoid | CYP76 | medium | borderline | CYP76__00025__sp_W8JIS5_IO_CATRO |
| BOERETT00026853 | Terpenoid | CYP76 | medium | borderline | CYP76__00013__sp_D1MI46_C76BA_SWEMU |
| BOERETT00027537 | Terpenoid | CYP76 | medium | borderline | CYP76__00016__sp_P0DXJ6_C7631_LOPWI |
| BOERETT00028522 | Terpenoid | CYP76 | low | borderline | CYP76__00016__sp_P0DXJ6_C7631_LOPWI |
| BOERETT00028524 | Terpenoid | CYP76 | medium | borderline | CYP76__00013__sp_D1MI46_C76BA_SWEMU |
| BOERETT00028525 | Terpenoid | CYP76 | medium | borderline | CYP76__00025__sp_W8JIS5_IO_CATRO |
| BOERETT00028529 | Terpenoid | CYP76 | medium | borderline | CYP76__00016__sp_P0DXJ6_C7631_LOPWI |
| BOERETT00028532 | Terpenoid | CYP76 | medium | borderline | CYP76__00023__sp_S4UX02_CYPH1_SALMI |
| BOERETT00028838 | Terpenoid | CYP76 | medium | pass | CYP76__00010__sp_A0A2K9RG08_CYBK1_VITAC |
| BOERETT00028839 | Terpenoid | CYP76 | medium | borderline | CYP76__00022__sp_Q8VWZ7_C76B6_CATRO |
| BOERETT00028882 | Terpenoid | CYP76 | medium | borderline | CYP76__00011__sp_A0A3Q9R4N5_C76B7_ARNEU |
| BOERETT00028889 | Terpenoid | CYP76 | medium | borderline | CYP76__00011__sp_A0A3Q9R4N5_C76B7_ARNEU |
| BOERETT00029123 | Terpenoid | CYP76 | medium | borderline | CYP76__00012__sp_A0AA51VJB7_C7694_LOPWI |
| BOERETT00029203 | Terpenoid | CYP76 | low | borderline | CYP76__00020__sp_Q6YTF5_C76M5_ORYSJ |
| BOERETT00030121 | Terpenoid | CYP76 | medium | pass | CYP76__00025__sp_W8JIS5_IO_CATRO |
| BOERETT00031652 | Terpenoid | CYP76 | low | borderline | CYP76__00012__sp_A0AA51VJB7_C7694_LOPWI |
| BOERETT00031660 | Terpenoid | CYP76 | low | borderline | CYP76__00012__sp_A0AA51VJB7_C7694_LOPWI |
| BOERETT00031663 | Terpenoid | CYP76 | low | borderline | CYP76__00012__sp_A0AA51VJB7_C7694_LOPWI |
| BOERETT00031676 | Terpenoid | CYP76 | low | borderline | CYP76__00012__sp_A0AA51VJB7_C7694_LOPWI |
| BOERETT00032189 | Terpenoid | CYP76 | medium | pass | CYP76__00011__sp_A0A3Q9R4N5_C76B7_ARNEU |
| BOERETT00033591 | Terpenoid | CYP76 | medium | borderline | CYP76__00025__sp_W8JIS5_IO_CATRO |
| BOERETT00034140 | Terpenoid | CYP76 | low | borderline | CYP76__00022__sp_Q8VWZ7_C76B6_CATRO |
| BOERETT00034302 | Terpenoid | CYP76 | low | borderline | CYP76__00020__sp_Q6YTF5_C76M5_ORYSJ |
| BOERETT00034768 | Terpenoid | CYP76 | low | borderline | CYP76__00009__sp_A0A1Z3GBS4_CYPH3_ISORU |
| BOERETT00035466 | Terpenoid | CYP76 | medium | borderline | CYP76__00022__sp_Q8VWZ7_C76B6_CATRO |
| BOERETT00035471 | Terpenoid | CYP76 | low | borderline | CYP76__00009__sp_A0A1Z3GBS4_CYPH3_ISORU |
| BOERETT00035972 | Terpenoid | CYP76 | medium | pass | CYP76__00012__sp_A0AA51VJB7_C7694_LOPWI |
| BOERETT00037383 | Terpenoid | CYP76 | low | borderline | CYP76__00012__sp_A0AA51VJB7_C7694_LOPWI |
| BOERETT00037649 | Terpenoid | CYP76 | low | borderline | CYP76__00014__sp_I3PFJ5_C76AD_BETVU |
| BOERETT00037908 | Terpenoid | CYP76 | low | borderline | CYP76__00009__sp_A0A1Z3GBS4_CYPH3_ISORU |
| BOERETT00038491 | Terpenoid | CYP76 | medium | pass | CYP76__00010__sp_A0A2K9RG08_CYBK1_VITAC |
| BOERETT00038496 | Terpenoid | CYP76 | medium | pass | CYP76__00013__sp_D1MI46_C76BA_SWEMU |
| BOERETT00038498 | Terpenoid | CYP76 | medium | pass | CYP76__00013__sp_D1MI46_C76BA_SWEMU |
| BOERETT00038504 | Terpenoid | CYP76 | medium | borderline | CYP76__00008__sp_A0A1D8QMG4_C76K8_ROSOF |
| BOERETT00038510 | Terpenoid | CYP76 | medium | borderline | CYP76__00013__sp_D1MI46_C76BA_SWEMU |
| BOERETT00038832 | Terpenoid | CYP76 | low | borderline | CYP76__00016__sp_P0DXJ6_C7631_LOPWI |
| BOERETT00039529 | Terpenoid | CYP76 | medium | borderline | CYP76__00011__sp_A0A3Q9R4N5_C76B7_ARNEU |
| BOERETT00041287 | Terpenoid | CYP76 | low | borderline | CYP76__00019__sp_Q6YTF1_C76M8_ORYSJ |
| BOERETT00041304 | Terpenoid | CYP76 | low | borderline | CYP76__00018__sp_Q69X58_C76M7_ORYSJ |
| BOERETT00043282 | Terpenoid | CYP76 | low | borderline | CYP76__00025__sp_W8JIS5_IO_CATRO |
| BOERETT00043927 | Terpenoid | CYP76 | medium | pass | CYP76__00010__sp_A0A2K9RG08_CYBK1_VITAC |
| BOERETT00043928 | Terpenoid | CYP76 | medium | pass | CYP76__00010__sp_A0A2K9RG08_CYBK1_VITAC |
| BOERETT00044045 | Terpenoid | CYP76 | low | borderline | CYP76__00025__sp_W8JIS5_IO_CATRO |
| BOERETT00044413 | Terpenoid | CYP76 | low | borderline | CYP76__00005__sp_A0A125QZE2_C76K1_SALMI |
| BOERETT00044468 | Terpenoid | CYP76 | medium | pass | CYP76__00012__sp_A0AA51VJB7_C7694_LOPWI |
| BOERETT00044987 | Terpenoid | CYP76 | medium | borderline | CYP76__00016__sp_P0DXJ6_C7631_LOPWI |
| BOERETT00045104 | Terpenoid | CYP76 | medium | pass | CYP76__00013__sp_D1MI46_C76BA_SWEMU |
| BOERETT00045105 | Terpenoid | CYP76 | medium | borderline | CYP76__00013__sp_D1MI46_C76BA_SWEMU |
| BOERETT00045107 | Terpenoid | CYP76 | medium | pass | CYP76__00013__sp_D1MI46_C76BA_SWEMU |
| BOERETT00045108 | Terpenoid | CYP76 | medium | pass | CYP76__00013__sp_D1MI46_C76BA_SWEMU |