PlantSME Plant secondary metabolism enzyme database

Boechera retrofracta (boechera_retrofracta)

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Imported from atlas release summary for Boechera retrofracta.

1221
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
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Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 372 19 BAHD (158) View species results
Alkaloid pathway 272 19 SGD (46) View species results
Phenylpropanoid pathway 257 11 POD (121) View species results
Flavonoid pathway 143 8 UFGT (95) View species results
Rosmarinic acid pathway 97 7 C4H (43) View species results
Steroid pathway 80 13 SMT1/SMT2/SMT3 (34) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1239 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 244 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: F3H
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Gene Pathway Family Confidence Status
BOERETT00035761 Flavonoid F3H medium borderline
BOERETT00035765 Flavonoid F3H medium borderline
BOERETT00036079 Flavonoid F3H medium borderline
BOERETT00036253 Flavonoid F3H medium borderline
BOERETT00036254 Flavonoid F3H medium borderline
BOERETT00036255 Flavonoid F3H medium borderline
BOERETT00037190 Flavonoid F3H medium pass
BOERETT00037563 Flavonoid F3H medium borderline
BOERETT00037714 Flavonoid F3H medium borderline
BOERETT00037715 Flavonoid F3H medium borderline
BOERETT00037718 Flavonoid F3H medium borderline
BOERETT00038217 Flavonoid F3H medium borderline
BOERETT00041738 Flavonoid F3H medium borderline
BOERETT00041819 Flavonoid F3H low borderline
BOERETT00041823 Flavonoid F3H low borderline
BOERETT00042408 Flavonoid F3H medium borderline
BOERETT00042462 Flavonoid F3H medium borderline
BOERETT00043607 Flavonoid F3H low borderline
BOERETT00043955 Flavonoid F3H medium borderline
BOERETT00045251 Flavonoid F3H medium pass
BOERETT00045502 Flavonoid F3H medium borderline
BOERETT00045505 Flavonoid F3H medium borderline
BOERETT00045506 Flavonoid F3H medium borderline
BOERETT00045522 Flavonoid F3H medium borderline
BOERETT00047969 Flavonoid F3H medium borderline
BOERETT00048308 Flavonoid F3H low borderline
BOERETT00049589 Flavonoid F3H medium borderline
BOERETT00049590 Flavonoid F3H medium borderline
BOERETT00050759 Flavonoid F3H low borderline
BOERETT00053741 Flavonoid F3H medium borderline
BOERETT00053969 Flavonoid F3H medium borderline
BOERETT00056136 Flavonoid F3H medium borderline
BOERETT00056464 Flavonoid F3H medium borderline
BOERETT00056792 Flavonoid F3H low borderline
BOERETT00058052 Flavonoid F3H medium borderline
BOERETT00058159 Flavonoid F3H low borderline
BOERETT00061108 Flavonoid F3H medium borderline