Boechera retrofracta (boechera_retrofracta)

This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.

Pathway Coverage

6 Pathways

Terpenoid pathway 30.47% Alkaloid pathway 22.28% Phenylpropanoid pathway 21.05% Flavonoid pathway 11.71% Rosmarinic acid pathway 7.94% Steroid pathway 6.55%

Family Distribution

1221 Candidate Genes

BAHD 6.38% C3'H/CYP98A 6.2% C4H 5.95% POD 4.14% 4CL 3.92% CYP76 3.89% IFS 3.77% UGT 3.49%

Other Families 62.25%

More Families (96)

T3O 104 3.24% UFGT 103 3.21% 7DLGT 101 3.15% F3H 87 2.71% DWF4/CYP90B1 83 2.58% NMT 78 2.43% BR6OX2/CYP85A2 72 2.24% F3'H/CYP75B 62 1.93% CODM/T6ODM 60 1.87% STR 59 1.84% SMT1/SMT2/SMT3 59 1.84% CYP71 58 1.81% SGD 50 1.56% TRI/TRII 48 1.49% CAD 39 1.21% CSE 36 1.12% CAS 36 1.12% H6H 35 1.09% SLS 32 1.0% T16H 32 1.0% IFR 31 0.97% TPS 29 0.9% BBE 28 0.87% PYKS 28 0.87% GES 26 0.81% COMT 25 0.78% FNS 24 0.75% LAC 24 0.75% LAMT 22 0.69% ANR 22 0.69% CYP90D1 21 0.65% RAS 20 0.62% GS 19 0.59% CCR 19 0.59% HCT 19 0.59% TAT 19 0.59% 16OMT 18 0.56% G8O/G8H 17 0.53% IO 17 0.53% F5H/CYP84A 17 0.53% CPD/CYP90A1 17 0.53% F3'5'H/CYP75A 15 0.47% PAL 15 0.47% CYP51G1 13 0.4% 8HGO 12 0.37% PMT 12 0.37% NCS 11 0.34% ANS/LDOX 11 0.34% FPPS 11 0.34% 7DLH 10 0.31% CNMT 10 0.31% GGPPS 10 0.31% COR 9 0.28% CYP719 9 0.28% SQE 8 0.25% MPO 7 0.22% CCoAOMT 7 0.22% ROT3/CYP90C1 7 0.22% BR6OX1/CYP85A1 7 0.22% CYP80F1 6 0.19% CPR 6 0.19% AACT 6 0.19% MDS/IspF 6 0.19% CHI 5 0.16% DFR 5 0.16% SQS/FDFT1 5 0.16% DET2 5 0.16% PMK 5 0.16% DXS 5 0.16% CYP80B1 4 0.12% CHS 4 0.12% HPPR 4 0.12% DWF7 4 0.12% MVK 4 0.12% MVD 4 0.12% MCT/IspD 4 0.12% XMT_MXMT_DXMT 3 0.09% ADC 3 0.09% SMO1/SMO2 3 0.09% CMK/IspE 3 0.09% TDC 2 0.06% TYDC_DDC 2 0.06% ISY 2 0.06% FLS 2 0.06% DWF1 2 0.06% HMGR 2 0.06% HDS/IspG 2 0.06% DXR 2 0.06% IDI 2 0.06% 6OMT_4OMT_SOMT 1 0.03% HYD1 1 0.03% DWF5 1 0.03% FK 1 0.03% CPI1 1 0.03% HMGS 1 0.03% HDR/IspH 1 0.03%

Species Pathway Results

The links below show identification results for this species within each pathway, instead of opening the global pathway overview.

Pathway	Candidate Genes	Families	Top family	Results
Terpenoid pathway	372	19	BAHD (158)	View species results
Alkaloid pathway	272	19	SGD (46)	View species results
Phenylpropanoid pathway	257	11	POD (121)	View species results
Flavonoid pathway	143	8	UFGT (95)	View species results
Rosmarinic acid pathway	97	7	C4H (43)	View species results
Steroid pathway	80	13	SMT1/SMT2/SMT3 (34)	View species results

Broad Catalytic Groups

P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.

Catalytic group	Families	Candidate genes	Included families
P450/oxygenase	24	1239	7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase	3	244	BAHD, HCT, RAS

Identification Result List

Search the public identification results for this species; click pathway or family legends above to narrow within this species.

Current family filter: NMT

Gene	Pathway	Family	Confidence	Status	Best Target
BOERETT00033881	Alkaloid	NMT	medium	borderline	NMT__00066__sp_Q9SU94_ANM11_ARATH
BOERETT00034918	Alkaloid	NMT	low	borderline	NMT__00024__sp_P0CB22_ATX2_ARATH
BOERETT00037808	Alkaloid	NMT	medium	pass	NMT__00054__sp_Q9FF80_SUVH1_ARATH
BOERETT00041277	Alkaloid	NMT	medium	borderline	NMT__00002__sp_A0A075D6M1_NNMT_RAUSE
BOERETT00041778	Alkaloid	NMT	low	borderline	NMT__00066__sp_Q9SU94_ANM11_ARATH
BOERETT00044338	Alkaloid	NMT	low	borderline	NMT__00040__sp_Q84WW6_ASHH1_ARATH
BOERETT00044370	Alkaloid	NMT	medium	pass	NMT__00041__sp_Q8GWT4_ANM15_ARATH
BOERETT00044434	Alkaloid	NMT	medium	borderline	NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI
BOERETT00044958	Alkaloid	NMT	medium	pass	NMT__00016__sp_F4JNX3_CMKMT_ARATH
BOERETT00045861	Alkaloid	NMT	low	borderline	NMT__00035__sp_Q6K431_TRX1_ORYSJ
BOERETT00046064	Alkaloid	NMT	medium	pass	NMT__00066__sp_Q9SU94_ANM11_ARATH
BOERETT00046702	Alkaloid	NMT	medium	pass	NMT__00017__sp_F4K1J4_ATXR7_ARATH
BOERETT00048036	Alkaloid	NMT	medium	pass	NMT__00032__sp_Q5PP37_ATXR2_ARATH
BOERETT00049451	Alkaloid	NMT	medium	borderline	NMT__00057__sp_Q9FR44_PEAM1_ARATH
BOERETT00049763	Alkaloid	NMT	medium	borderline	NMT__00023__sp_O82210_ANM12_ARATH
BOERETT00050423	Alkaloid	NMT	medium	pass	NMT__00055__sp_Q9FNC7_SUVR2_ARATH
BOERETT00052249	Alkaloid	NMT	low	borderline	NMT__00068__sp_Q9XI84_RBCMT_ARATH
BOERETT00052423	Alkaloid	NMT	medium	borderline	NMT__00007__sp_A0A6C0WX00_CKTBS_CAMSB
BOERETT00053965	Alkaloid	NMT	low	borderline	NMT__00056__sp_Q9FNE9_ATXR6_ARATH
BOERETT00054178	Alkaloid	NMT	medium	pass	NMT__00046__sp_Q8VZ17_SUVH6_ARATH
BOERETT00054420	Alkaloid	NMT	medium	pass	NMT__00019__sp_O22781_SUVH2_ARATH
BOERETT00057666	Alkaloid	NMT	medium	pass	NMT__00039__sp_Q84W92_ANM13_ARATH
BOERETT00058810	Alkaloid	NMT	medium	pass	NMT__00067__sp_Q9T0G7_SUVH9_ARATH
BOERETT00059539	Alkaloid	NMT	low	borderline	NMT__00047__sp_Q8VZJ1_ATXR5_ARATH
BOERETT00059834	Alkaloid	NMT	low	borderline	NMT__00054__sp_Q9FF80_SUVH1_ARATH
BOERETT00059935	Alkaloid	NMT	medium	pass	NMT__00048__sp_Q8W595_SUVR4_ARATH
BOERETT00060765	Alkaloid	NMT	medium	pass	NMT__00066__sp_Q9SU94_ANM11_ARATH
BOERETT00060985	Alkaloid	NMT	low	borderline	NMT__00047__sp_Q8VZJ1_ATXR5_ARATH