PlantSME Plant secondary metabolism enzyme database

Boechera retrofracta (boechera_retrofracta)

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Imported from atlas release summary for Boechera retrofracta.

1602
Candidate Protein Records
1221
Pathway-Level Records
3211
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 372 19 BAHD (158) View species results
Alkaloid pathway 272 19 SGD (46) View species results
Phenylpropanoid pathway 257 11 POD (121) View species results
Flavonoid pathway 143 8 UFGT (95) View species results
Rosmarinic acid pathway 97 7 C4H (43) View species results
Steroid pathway 80 13 SMT1/SMT2/SMT3 (34) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1239 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 244 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
BOERETT00059539 Alkaloid NMT low borderline
BOERETT00059834 Alkaloid NMT low borderline
BOERETT00059935 Alkaloid NMT medium pass
BOERETT00060765 Alkaloid NMT medium pass
BOERETT00060985 Alkaloid NMT low borderline
BOERETT00005813 Alkaloid PMT medium borderline
BOERETT00009393 Alkaloid PMT medium borderline
BOERETT00034087 Alkaloid PMT low borderline
BOERETT00034876 Alkaloid PMT medium borderline
BOERETT00036251 Alkaloid PMT low borderline
BOERETT00037244 Alkaloid PMT low borderline
BOERETT00043261 Alkaloid PMT medium pass
BOERETT00045016 Alkaloid PMT low borderline
BOERETT00045412 Alkaloid PMT low borderline
BOERETT00046101 Alkaloid PMT low borderline
BOERETT00048370 Alkaloid PMT low borderline
BOERETT00061223 Alkaloid PMT medium pass
BOERETT00001810 Alkaloid PYKS high pass
BOERETT00005285 Alkaloid PYKS low borderline
BOERETT00006055 Alkaloid PYKS low borderline
BOERETT00009099 Alkaloid PYKS low borderline
BOERETT00009533 Alkaloid PYKS low borderline
BOERETT00013167 Alkaloid PYKS low borderline
BOERETT00015096 Alkaloid PYKS low borderline
BOERETT00018471 Alkaloid PYKS low borderline
BOERETT00018898 Alkaloid PYKS low borderline
BOERETT00019129 Alkaloid PYKS low borderline
BOERETT00019232 Alkaloid PYKS high pass
BOERETT00022670 Alkaloid PYKS low borderline
BOERETT00023240 Alkaloid PYKS low borderline
BOERETT00024302 Alkaloid PYKS high pass
BOERETT00025831 Alkaloid PYKS low borderline
BOERETT00032701 Alkaloid PYKS low borderline
BOERETT00033687 Alkaloid PYKS low borderline
BOERETT00042603 Alkaloid PYKS low borderline
BOERETT00043300 Alkaloid PYKS low borderline
BOERETT00043732 Alkaloid PYKS low borderline
BOERETT00043734 Alkaloid PYKS low borderline
BOERETT00044743 Alkaloid PYKS low borderline
BOERETT00044784 Alkaloid PYKS low borderline
BOERETT00044785 Alkaloid PYKS low borderline
BOERETT00044823 Alkaloid PYKS high pass
BOERETT00055432 Alkaloid PYKS low borderline
BOERETT00055575 Alkaloid PYKS low borderline
BOERETT00057661 Alkaloid PYKS low borderline
BOERETT00000178 Alkaloid SGD medium pass
BOERETT00000201 Alkaloid SGD medium pass
BOERETT00001701 Alkaloid SGD medium pass
BOERETT00004845 Alkaloid SGD medium pass
BOERETT00005975 Alkaloid SGD medium pass