PlantSME Plant secondary metabolism enzyme database

Boechera retrofracta (boechera_retrofracta)

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Imported from atlas release summary for Boechera retrofracta.

1221
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 372 19 BAHD (158) View species results
Alkaloid pathway 272 19 SGD (46) View species results
Phenylpropanoid pathway 257 11 POD (121) View species results
Flavonoid pathway 143 8 UFGT (95) View species results
Rosmarinic acid pathway 97 7 C4H (43) View species results
Steroid pathway 80 13 SMT1/SMT2/SMT3 (34) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1239 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 244 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Gene Pathway Family Confidence Status
BOERETT00019868 Alkaloid 7DLGT low borderline
BOERETT00020626 Alkaloid 7DLGT high pass
BOERETT00021456 Alkaloid 7DLGT low borderline
BOERETT00021518 Alkaloid 7DLGT low borderline
BOERETT00021523 Alkaloid 7DLGT low borderline
BOERETT00023107 Alkaloid 7DLGT low borderline
BOERETT00023381 Alkaloid 7DLGT high pass
BOERETT00023382 Alkaloid 7DLGT high pass
BOERETT00023383 Alkaloid 7DLGT high pass
BOERETT00023384 Alkaloid 7DLGT high pass
BOERETT00024172 Alkaloid 7DLGT low borderline
BOERETT00024410 Alkaloid 7DLGT low borderline
BOERETT00026190 Alkaloid 7DLGT low borderline
BOERETT00026191 Alkaloid 7DLGT low borderline
BOERETT00026192 Alkaloid 7DLGT low borderline
BOERETT00026304 Alkaloid 7DLGT low borderline
BOERETT00026457 Alkaloid 7DLGT low borderline
BOERETT00026459 Alkaloid 7DLGT low borderline
BOERETT00027618 Alkaloid 7DLGT medium pass
BOERETT00028550 Alkaloid 7DLGT low borderline
BOERETT00029396 Alkaloid 7DLGT medium pass
BOERETT00030377 Alkaloid 7DLGT medium pass
BOERETT00032186 Alkaloid 7DLGT low borderline
BOERETT00032233 Alkaloid 7DLGT medium pass
BOERETT00033860 Alkaloid 7DLGT medium pass
BOERETT00034336 Alkaloid 7DLGT high pass
BOERETT00034337 Alkaloid 7DLGT high pass
BOERETT00034341 Alkaloid 7DLGT high pass
BOERETT00034343 Alkaloid 7DLGT medium pass
BOERETT00035007 Alkaloid 7DLGT low borderline
BOERETT00035011 Alkaloid 7DLGT low borderline
BOERETT00035013 Alkaloid 7DLGT low borderline
BOERETT00035032 Alkaloid 7DLGT low borderline
BOERETT00035769 Alkaloid 7DLGT medium pass
BOERETT00035770 Alkaloid 7DLGT medium pass
BOERETT00036659 Alkaloid 7DLGT medium pass
BOERETT00036660 Alkaloid 7DLGT medium pass
BOERETT00040413 Alkaloid 7DLGT high pass
BOERETT00040414 Alkaloid 7DLGT medium pass
BOERETT00041288 Alkaloid 7DLGT low borderline
BOERETT00042556 Alkaloid 7DLGT low borderline
BOERETT00043642 Alkaloid 7DLGT low borderline
BOERETT00043643 Alkaloid 7DLGT low borderline
BOERETT00044167 Alkaloid 7DLGT low borderline
BOERETT00044724 Alkaloid 7DLGT low borderline
BOERETT00044725 Alkaloid 7DLGT low borderline
BOERETT00044726 Alkaloid 7DLGT low borderline
BOERETT00045038 Alkaloid 7DLGT low borderline
BOERETT00047991 Alkaloid 7DLGT low borderline
BOERETT00048020 Alkaloid 7DLGT low borderline