PlantSME Plant secondary metabolism enzyme database

Boechera retrofracta (boechera_retrofracta)

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Imported from atlas release summary for Boechera retrofracta.

1602
Candidate Protein Records
1221
Pathway-Level Records
3211
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 372 19 BAHD (158) View species results
Alkaloid pathway 272 19 SGD (46) View species results
Phenylpropanoid pathway 257 11 POD (121) View species results
Flavonoid pathway 143 8 UFGT (95) View species results
Rosmarinic acid pathway 97 7 C4H (43) View species results
Steroid pathway 80 13 SMT1/SMT2/SMT3 (34) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1239 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 244 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Terpenoid pathway
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Protein/Isoform Record Pathway Family Confidence Status
BOERETT00011376 Terpenoid DXS medium pass
BOERETT00024026 Terpenoid DXS medium pass
BOERETT00047982 Terpenoid DXS medium pass
BOERETT00047984 Terpenoid DXS medium pass
BOERETT00007939 Terpenoid FPPS medium pass
BOERETT00008019 Terpenoid FPPS medium pass
BOERETT00017018 Terpenoid FPPS medium pass
BOERETT00035290 Terpenoid FPPS medium pass
BOERETT00035654 Terpenoid FPPS medium pass
BOERETT00035655 Terpenoid FPPS medium pass
BOERETT00035656 Terpenoid FPPS medium pass
BOERETT00035657 Terpenoid FPPS medium pass
BOERETT00035877 Terpenoid FPPS medium pass
BOERETT00041880 Terpenoid FPPS medium pass
BOERETT00044139 Terpenoid FPPS medium pass
BOERETT00003581 Terpenoid GGPPS medium borderline
BOERETT00017078 Terpenoid GGPPS medium borderline
BOERETT00020173 Terpenoid GGPPS medium borderline
BOERETT00026790 Terpenoid GGPPS medium borderline
BOERETT00037721 Terpenoid GGPPS medium borderline
BOERETT00045042 Terpenoid GGPPS medium borderline
BOERETT00047304 Terpenoid GGPPS medium borderline
BOERETT00049782 Terpenoid GGPPS medium borderline
BOERETT00054253 Terpenoid GGPPS medium borderline
BOERETT00057674 Terpenoid GGPPS medium borderline
BOERETT00044754 Terpenoid HDR/IspH high pass
BOERETT00028085 Terpenoid HDS/IspG low borderline
BOERETT00035888 Terpenoid HDS/IspG high pass
BOERETT00010254 Terpenoid HMGR medium pass
BOERETT00044169 Terpenoid HMGR medium pass
BOERETT00036870 Terpenoid HMGS high pass
BOERETT00059689 Terpenoid IDI medium pass
BOERETT00061830 Terpenoid IDI medium pass
BOERETT00028238 Terpenoid MCT/IspD high pass
BOERETT00030782 Terpenoid MCT/IspD low borderline
BOERETT00038017 Terpenoid MCT/IspD low borderline
BOERETT00054195 Terpenoid MCT/IspD low borderline
BOERETT00022728 Terpenoid MDS/IspF high pass
BOERETT00041702 Terpenoid MDS/IspF low borderline
BOERETT00048237 Terpenoid MDS/IspF low borderline
BOERETT00048240 Terpenoid MDS/IspF low borderline
BOERETT00048258 Terpenoid MDS/IspF low borderline
BOERETT00048408 Terpenoid MDS/IspF low borderline
BOERETT00023269 Terpenoid MVD low borderline
BOERETT00026591 Terpenoid MVD medium pass
BOERETT00037696 Terpenoid MVD low borderline
BOERETT00053668 Terpenoid MVD medium pass
BOERETT00015196 Terpenoid MVK low borderline
BOERETT00018313 Terpenoid MVK medium pass
BOERETT00041712 Terpenoid MVK low borderline