PlantSME Plant secondary metabolism enzyme database

Brassica rapa (brassica_rapa)

Imported from atlas release summary for Brassica rapa.

2396
Candidate Protein Records
1938
Pathway-Level Records
4856
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 598 20 BAHD (263) View species results
Alkaloid pathway 432 17 7DLGT (75) View species results
Phenylpropanoid pathway 407 11 POD (183) View species results
Flavonoid pathway 231 11 UFGT (148) View species results
Rosmarinic acid pathway 154 7 C4H (63) View species results
Steroid pathway 116 13 SMT1/SMT2/SMT3 (42) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1919 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 380 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Terpenoid pathway
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Protein/Isoform Record Pathway Family Confidence Status
Bra001832.1-P Terpenoid DXS medium pass
Bra008967.1-P Terpenoid DXS medium pass
Bra012779.1-P Terpenoid DXS medium pass
Bra033495.1-P Terpenoid DXS medium pass
Bra000530.1-P Terpenoid FPPS medium pass
Bra002074.1-P Terpenoid FPPS medium pass
Bra002476.1-P Terpenoid FPPS medium pass
Bra002477.1-P Terpenoid FPPS medium pass
Bra002618.1-P Terpenoid FPPS medium pass
Bra002619.1-P Terpenoid FPPS medium pass
Bra017212.1-P Terpenoid FPPS medium pass
Bra020353.1-P Terpenoid FPPS medium pass
Bra020354.1-P Terpenoid FPPS medium pass
Bra022156.1-P Terpenoid FPPS medium pass
Bra024508.1-P Terpenoid FPPS medium pass
Bra024917.1-P Terpenoid FPPS medium pass
Bra033131.1-P Terpenoid FPPS medium pass
Bra001556.1-P Terpenoid GGPPS medium borderline
Bra001777.1-P Terpenoid GGPPS medium borderline
Bra010576.1-P Terpenoid GGPPS medium borderline
Bra011709.1-P Terpenoid GGPPS medium borderline
Bra011898.1-P Terpenoid GGPPS medium borderline
Bra017785.1-P Terpenoid GGPPS medium borderline
Bra021562.1-P Terpenoid GGPPS medium borderline
Bra021565.1-P Terpenoid GGPPS medium borderline
Bra022982.1-P Terpenoid GGPPS medium borderline
Bra026006.1-P Terpenoid GGPPS medium borderline
Bra027330.1-P Terpenoid GGPPS medium borderline
Bra028094.1-P Terpenoid GGPPS medium borderline
Bra028096.1-P Terpenoid GGPPS medium borderline
Bra032140.1-P Terpenoid GGPPS medium borderline
Bra035042.1-P Terpenoid GGPPS medium borderline
Bra035808.1-P Terpenoid GGPPS medium borderline
Bra038544.1-P Terpenoid GGPPS medium borderline
Bra039216.1-P Terpenoid GGPPS medium borderline
Bra005405.1-P Terpenoid GPPS medium borderline
Bra011522.1-P Terpenoid HDR/IspH high pass
Bra034620.1-P Terpenoid HDR/IspH high pass
Bra002468.1-P Terpenoid HDS/IspG high pass
Bra002053.1-P Terpenoid HMGR medium pass
Bra008261.1-P Terpenoid HMGR medium pass
Bra014102.1-P Terpenoid HMGR medium pass
Bra015739.1-P Terpenoid HMGR medium pass
Bra014870.1-P Terpenoid HMGS high pass
Bra033126.1-P Terpenoid HMGS high pass
Bra001063.1-P Terpenoid IDI medium pass
Bra006354.1-P Terpenoid IDI medium pass
Bra021411.1-P Terpenoid IDI medium pass
Bra040599.1-P Terpenoid IDI medium pass
Bra005373.1-P Terpenoid MCT/IspD low borderline