PlantSME Plant secondary metabolism enzyme database

Brassica rapa (brassica_rapa)

Imported from atlas release summary for Brassica rapa.

2396
Candidate Protein Records
1938
Pathway-Level Records
4856
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 598 20 BAHD (263) View species results
Alkaloid pathway 432 17 7DLGT (75) View species results
Phenylpropanoid pathway 407 11 POD (183) View species results
Flavonoid pathway 231 11 UFGT (148) View species results
Rosmarinic acid pathway 154 7 C4H (63) View species results
Steroid pathway 116 13 SMT1/SMT2/SMT3 (42) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1919 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 380 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Terpenoid pathway
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Protein/Isoform Record Pathway Family Confidence Status
Bra023160.1-P Terpenoid MCT/IspD low borderline
Bra026591.1-P Terpenoid MCT/IspD high pass
Bra038405.1-P Terpenoid MCT/IspD low borderline
Bra027672.1-P Terpenoid MDS/IspF high pass
Bra027770.1-P Terpenoid MDS/IspF high pass
Bra005816.1-P Terpenoid MVD low borderline
Bra007059.1-P Terpenoid MVD medium pass
Bra009433.1-P Terpenoid MVD low borderline
Bra014828.1-P Terpenoid MVD medium pass
Bra016627.1-P Terpenoid MVD low borderline
Bra026019.1-P Terpenoid MVD low borderline
Bra028781.1-P Terpenoid MVD low borderline
Bra001204.1-P Terpenoid MVK low borderline
Bra002047.1-P Terpenoid MVK low borderline
Bra007834.1-P Terpenoid MVK low borderline
Bra009655.1-P Terpenoid MVK low borderline
Bra020589.1-P Terpenoid MVK medium pass
Bra029589.1-P Terpenoid MVK low borderline
Bra036630.1-P Terpenoid MVK medium pass
Bra037278.1-P Terpenoid MVK low borderline
Bra025673.1-P Terpenoid PMK low borderline
Bra032466.1-P Terpenoid PMK low borderline
Bra035519.1-P Terpenoid PMK medium pass
Bra000568.1-P Terpenoid TPS medium pass
Bra000727.1-P Terpenoid TPS medium pass
Bra000864.1-P Terpenoid TPS medium pass
Bra001555.1-P Terpenoid TPS medium pass
Bra001557.1-P Terpenoid TPS medium pass
Bra002165.1-P Terpenoid TPS medium pass
Bra002714.1-P Terpenoid TPS medium pass
Bra002967.1-P Terpenoid TPS medium pass
Bra002968.1-P Terpenoid TPS medium pass
Bra009717.1-P Terpenoid TPS medium pass
Bra012513.1-P Terpenoid TPS medium pass
Bra012515.1-P Terpenoid TPS medium pass
Bra012955.1-P Terpenoid TPS medium pass
Bra020921.1-P Terpenoid TPS medium pass
Bra020922.1-P Terpenoid TPS medium pass
Bra020953.1-P Terpenoid TPS medium pass
Bra021082.1-P Terpenoid TPS medium pass
Bra021560.1-P Terpenoid TPS medium pass
Bra021563.1-P Terpenoid TPS medium pass
Bra021564.1-P Terpenoid TPS medium pass
Bra021566.1-P Terpenoid TPS medium pass
Bra025163.1-P Terpenoid TPS medium pass
Bra025164.1-P Terpenoid TPS medium pass
Bra027079.1-P Terpenoid TPS medium pass
Bra027098.1-P Terpenoid TPS low borderline
Bra027099.1-P Terpenoid TPS medium pass
Bra027608.1-P Terpenoid TPS medium pass