PlantSME Plant secondary metabolism enzyme database

Brassica rapa (brassica_rapa)

Imported from atlas release summary for Brassica rapa.

1938
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 598 20 BAHD (263) View species results
Alkaloid pathway 432 17 7DLGT (75) View species results
Phenylpropanoid pathway 407 11 POD (183) View species results
Flavonoid pathway 231 11 UFGT (148) View species results
Rosmarinic acid pathway 154 7 C4H (63) View species results
Steroid pathway 116 13 SMT1/SMT2/SMT3 (42) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1919 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 380 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Gene Pathway Family Confidence Status
Bra005246.1-P Alkaloid 7DLGT medium pass
Bra005641.1-P Alkaloid 7DLGT medium pass
Bra005869.1-P Alkaloid 7DLGT high pass
Bra006271.1-P Alkaloid 7DLGT low borderline
Bra006707.1-P Alkaloid 7DLGT high pass
Bra006971.1-P Alkaloid 7DLGT low borderline
Bra006972.1-P Alkaloid 7DLGT low borderline
Bra006973.1-P Alkaloid 7DLGT low borderline
Bra007184.1-P Alkaloid 7DLGT medium pass
Bra007812.1-P Alkaloid 7DLGT medium pass
Bra008354.1-P Alkaloid 7DLGT medium pass
Bra008535.1-P Alkaloid 7DLGT medium pass
Bra008540.1-P Alkaloid 7DLGT high pass
Bra008734.1-P Alkaloid 7DLGT low borderline
Bra008873.1-P Alkaloid 7DLGT medium pass
Bra009142.1-P Alkaloid 7DLGT high pass
Bra009143.1-P Alkaloid 7DLGT medium pass
Bra009144.1-P Alkaloid 7DLGT high pass
Bra009145.1-P Alkaloid 7DLGT high pass
Bra009146.1-P Alkaloid 7DLGT high pass
Bra009147.1-P Alkaloid 7DLGT high pass
Bra010190.1-P Alkaloid 7DLGT low borderline
Bra011490.1-P Alkaloid 7DLGT low borderline
Bra011492.1-P Alkaloid 7DLGT low borderline
Bra011493.1-P Alkaloid 7DLGT low borderline
Bra011495.1-P Alkaloid 7DLGT low borderline
Bra011496.1-P Alkaloid 7DLGT low borderline
Bra011705.1-P Alkaloid 7DLGT low borderline
Bra012092.1-P Alkaloid 7DLGT medium pass
Bra012322.1-P Alkaloid 7DLGT medium pass
Bra012323.1-P Alkaloid 7DLGT medium pass
Bra012324.1-P Alkaloid 7DLGT medium pass
Bra012780.1-P Alkaloid 7DLGT low borderline
Bra012784.1-P Alkaloid 7DLGT low borderline
Bra012795.1-P Alkaloid 7DLGT medium pass
Bra012892.1-P Alkaloid 7DLGT medium pass
Bra012893.1-P Alkaloid 7DLGT low borderline
Bra013043.1-P Alkaloid 7DLGT medium pass
Bra013105.1-P Alkaloid 7DLGT low borderline
Bra014225.1-P Alkaloid 7DLGT low borderline
Bra014275.1-P Alkaloid 7DLGT low borderline
Bra015219.1-P Alkaloid 7DLGT low borderline
Bra015435.1-P Alkaloid 7DLGT high pass
Bra015448.1-P Alkaloid 7DLGT high pass
Bra015567.1-P Alkaloid 7DLGT low borderline
Bra015568.1-P Alkaloid 7DLGT low borderline
Bra016382.1-P Alkaloid 7DLGT medium pass
Bra016424.1-P Alkaloid 7DLGT low borderline
Bra017224.1-P Alkaloid 7DLGT low borderline
Bra017463.1-P Alkaloid 7DLGT medium pass