PlantSME Plant secondary metabolism enzyme database

Brassica rapa (brassica_rapa)

Imported from atlas release summary for Brassica rapa.

1938
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 598 20 BAHD (263) View species results
Alkaloid pathway 432 17 7DLGT (75) View species results
Phenylpropanoid pathway 407 11 POD (183) View species results
Flavonoid pathway 231 11 UFGT (148) View species results
Rosmarinic acid pathway 154 7 C4H (63) View species results
Steroid pathway 116 13 SMT1/SMT2/SMT3 (42) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1919 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 380 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Gene Pathway Family Confidence Status
Bra017882.1-P Alkaloid 7DLGT medium pass
Bra018200.1-P Alkaloid 7DLGT medium pass
Bra018201.1-P Alkaloid 7DLGT high pass
Bra018202.1-P Alkaloid 7DLGT high pass
Bra018203.1-P Alkaloid 7DLGT high pass
Bra018333.1-P Alkaloid 7DLGT low borderline
Bra018334.1-P Alkaloid 7DLGT medium pass
Bra018363.1-P Alkaloid 7DLGT low borderline
Bra018364.1-P Alkaloid 7DLGT low borderline
Bra018440.1-P Alkaloid 7DLGT low borderline
Bra018792.1-P Alkaloid 7DLGT low borderline
Bra018901.1-P Alkaloid 7DLGT low borderline
Bra020310.1-P Alkaloid 7DLGT medium pass
Bra021740.1-P Alkaloid 7DLGT medium pass
Bra021743.1-P Alkaloid 7DLGT medium pass
Bra021887.1-P Alkaloid 7DLGT low borderline
Bra022165.1-P Alkaloid 7DLGT medium pass
Bra022688.1-P Alkaloid 7DLGT low borderline
Bra022689.1-P Alkaloid 7DLGT low borderline
Bra022781.1-P Alkaloid 7DLGT low borderline
Bra022864.1-P Alkaloid 7DLGT medium pass
Bra023079.1-P Alkaloid 7DLGT medium pass
Bra023080.1-P Alkaloid 7DLGT low borderline
Bra023081.1-P Alkaloid 7DLGT low borderline
Bra023594.1-P Alkaloid 7DLGT low borderline
Bra023841.1-P Alkaloid 7DLGT low borderline
Bra023861.1-P Alkaloid 7DLGT medium pass
Bra023863.1-P Alkaloid 7DLGT medium pass
Bra023872.1-P Alkaloid 7DLGT low borderline
Bra024461.1-P Alkaloid 7DLGT medium pass
Bra024634.1-P Alkaloid 7DLGT low borderline
Bra028098.1-P Alkaloid 7DLGT medium pass
Bra029045.1-P Alkaloid 7DLGT low borderline
Bra029046.1-P Alkaloid 7DLGT low borderline
Bra029049.1-P Alkaloid 7DLGT low borderline
Bra030620.1-P Alkaloid 7DLGT high pass
Bra031102.1-P Alkaloid 7DLGT high pass
Bra031290.1-P Alkaloid 7DLGT low borderline
Bra031303.1-P Alkaloid 7DLGT medium pass
Bra031304.1-P Alkaloid 7DLGT low borderline
Bra031306.1-P Alkaloid 7DLGT medium pass
Bra031307.1-P Alkaloid 7DLGT low borderline
Bra031310.1-P Alkaloid 7DLGT medium pass
Bra031343.1-P Alkaloid 7DLGT medium pass
Bra031386.1-P Alkaloid 7DLGT medium pass
Bra031387.1-P Alkaloid 7DLGT medium pass
Bra031388.1-P Alkaloid 7DLGT medium pass
Bra031483.1-P Alkaloid 7DLGT medium pass
Bra031559.1-P Alkaloid 7DLGT medium pass
Bra031561.1-P Alkaloid 7DLGT low borderline