PlantSME Plant secondary metabolism enzyme database

Brassica rapa (brassica_rapa)

Imported from atlas release summary for Brassica rapa.

1938
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 598 20 BAHD (263) View species results
Alkaloid pathway 432 17 7DLGT (75) View species results
Phenylpropanoid pathway 407 11 POD (183) View species results
Flavonoid pathway 231 11 UFGT (148) View species results
Rosmarinic acid pathway 154 7 C4H (63) View species results
Steroid pathway 116 13 SMT1/SMT2/SMT3 (42) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1919 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 380 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Steroid pathway
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Gene Pathway Family Confidence Status
Bra014143.1-P Steroid BR6OX2/CYP85A2 low borderline
Bra014461.1-P Steroid BR6OX2/CYP85A2 low borderline
Bra014462.1-P Steroid BR6OX2/CYP85A2 low borderline
Bra015810.1-P Steroid BR6OX2/CYP85A2 low borderline
Bra015865.1-P Steroid BR6OX2/CYP85A2 low borderline
Bra015934.1-P Steroid BR6OX2/CYP85A2 low borderline
Bra016621.1-P Steroid BR6OX2/CYP85A2 low borderline
Bra016739.1-P Steroid BR6OX2/CYP85A2 low borderline
Bra016908.1-P Steroid BR6OX2/CYP85A2 low borderline
Bra016964.1-P Steroid BR6OX2/CYP85A2 low borderline
Bra017333.1-P Steroid BR6OX2/CYP85A2 low borderline
Bra018311.1-P Steroid BR6OX2/CYP85A2 low borderline
Bra018471.1-P Steroid BR6OX2/CYP85A2 low borderline
Bra018856.1-P Steroid BR6OX2/CYP85A2 low borderline
Bra019808.1-P Steroid BR6OX2/CYP85A2 low borderline
Bra019809.1-P Steroid BR6OX2/CYP85A2 low borderline
Bra020345.1-P Steroid BR6OX2/CYP85A2 low borderline
Bra020679.1-P Steroid BR6OX2/CYP85A2 low borderline
Bra021572.1-P Steroid BR6OX2/CYP85A2 low borderline
Bra021636.1-P Steroid BR6OX2/CYP85A2 low borderline
Bra021917.1-P Steroid BR6OX2/CYP85A2 low borderline
Bra022591.1-P Steroid BR6OX2/CYP85A2 low borderline
Bra022802.1-P Steroid BR6OX2/CYP85A2 low borderline
Bra022803.1-P Steroid BR6OX2/CYP85A2 low borderline
Bra024001.1-P Steroid BR6OX2/CYP85A2 low borderline
Bra024465.1-P Steroid BR6OX2/CYP85A2 low borderline
Bra025190.1-P Steroid BR6OX2/CYP85A2 low borderline
Bra025472.1-P Steroid BR6OX2/CYP85A2 low borderline
Bra026005.1-P Steroid BR6OX2/CYP85A2 low borderline
Bra026508.1-P Steroid BR6OX2/CYP85A2 low borderline
Bra026692.1-P Steroid BR6OX2/CYP85A2 low borderline
Bra026930.1-P Steroid BR6OX2/CYP85A2 low borderline
Bra026933.1-P Steroid BR6OX2/CYP85A2 low borderline
Bra026934.1-P Steroid BR6OX2/CYP85A2 low borderline
Bra027137.1-P Steroid BR6OX2/CYP85A2 low borderline
Bra027323.1-P Steroid BR6OX2/CYP85A2 low borderline
Bra027324.1-P Steroid BR6OX2/CYP85A2 low borderline
Bra027331.1-P Steroid BR6OX2/CYP85A2 low borderline
Bra027515.1-P Steroid BR6OX2/CYP85A2 low borderline
Bra027902.1-P Steroid BR6OX2/CYP85A2 low borderline
Bra028207.1-P Steroid BR6OX2/CYP85A2 low borderline
Bra029445.1-P Steroid BR6OX2/CYP85A2 low borderline
Bra030484.1-P Steroid BR6OX2/CYP85A2 low borderline
Bra031773.1-P Steroid BR6OX2/CYP85A2 low borderline
Bra032114.1-P Steroid BR6OX2/CYP85A2 low borderline
Bra032624.1-P Steroid BR6OX2/CYP85A2 low borderline
Bra032631.1-P Steroid BR6OX2/CYP85A2 low borderline
Bra032642.1-P Steroid BR6OX2/CYP85A2 low borderline
Bra032734.1-P Steroid BR6OX2/CYP85A2 low borderline
Bra032794.1-P Steroid BR6OX2/CYP85A2 low borderline