PlantSME Plant secondary metabolism enzyme database

Brassica rapa (brassica_rapa)

Imported from atlas release summary for Brassica rapa.

1938
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 598 20 BAHD (263) View species results
Alkaloid pathway 432 17 7DLGT (75) View species results
Phenylpropanoid pathway 407 11 POD (183) View species results
Flavonoid pathway 231 11 UFGT (148) View species results
Rosmarinic acid pathway 154 7 C4H (63) View species results
Steroid pathway 116 13 SMT1/SMT2/SMT3 (42) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1919 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 380 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Steroid pathway
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Gene Pathway Family Confidence Status
Bra033251.1-P Steroid BR6OX2/CYP85A2 low borderline
Bra033272.1-P Steroid BR6OX2/CYP85A2 low borderline
Bra033278.1-P Steroid BR6OX2/CYP85A2 low borderline
Bra033509.1-P Steroid BR6OX2/CYP85A2 low borderline
Bra033622.1-P Steroid BR6OX2/CYP85A2 low borderline
Bra033623.1-P Steroid BR6OX2/CYP85A2 low borderline
Bra033624.1-P Steroid BR6OX2/CYP85A2 low borderline
Bra033625.1-P Steroid BR6OX2/CYP85A2 low borderline
Bra033626.1-P Steroid BR6OX2/CYP85A2 low borderline
Bra034022.1-P Steroid BR6OX2/CYP85A2 low borderline
Bra035813.1-P Steroid BR6OX2/CYP85A2 low borderline
Bra035814.1-P Steroid BR6OX2/CYP85A2 low borderline
Bra035818.1-P Steroid BR6OX2/CYP85A2 low borderline
Bra036346.1-P Steroid BR6OX2/CYP85A2 low borderline
Bra037336.1-P Steroid BR6OX2/CYP85A2 low borderline
Bra038254.1-P Steroid BR6OX2/CYP85A2 low borderline
Bra038413.1-P Steroid BR6OX2/CYP85A2 low borderline
Bra038632.1-P Steroid BR6OX2/CYP85A2 low borderline
Bra039187.1-P Steroid BR6OX2/CYP85A2 low borderline
Bra039231.1-P Steroid BR6OX2/CYP85A2 low borderline
Bra039267.1-P Steroid BR6OX2/CYP85A2 low borderline
Bra039495.1-P Steroid BR6OX2/CYP85A2 low borderline
Bra040552.1-P Steroid BR6OX2/CYP85A2 low borderline
Bra040720.1-P Steroid BR6OX2/CYP85A2 low borderline
Bra040985.1-P Steroid BR6OX2/CYP85A2 low borderline
Bra000568.1-P Steroid CAS medium pass
Bra000727.1-P Steroid CAS medium pass
Bra000864.1-P Steroid CAS medium pass
Bra001131.1-P Steroid CAS medium pass
Bra001555.1-P Steroid CAS low borderline
Bra003630.1-P Steroid CAS medium pass
Bra004781.1-P Steroid CAS medium pass
Bra007604.1-P Steroid CAS medium pass
Bra009985.1-P Steroid CAS medium pass
Bra012955.1-P Steroid CAS low borderline
Bra013013.1-P Steroid CAS medium pass
Bra013167.1-P Steroid CAS medium pass
Bra014436.1-P Steroid CAS medium pass
Bra014529.1-P Steroid CAS medium pass
Bra014952.1-P Steroid CAS medium pass
Bra020605.1-P Steroid CAS medium pass
Bra020953.1-P Steroid CAS low borderline
Bra021082.1-P Steroid CAS medium pass
Bra025163.1-P Steroid CAS medium pass
Bra025164.1-P Steroid CAS low borderline
Bra026038.1-P Steroid CAS medium pass
Bra027098.1-P Steroid CAS low borderline
Bra032185.1-P Steroid CAS medium pass
Bra035078.1-P Steroid CAS medium pass
Bra035079.1-P Steroid CAS medium pass