PlantSME Plant secondary metabolism enzyme database

Brassica rapa (brassica_rapa)

Imported from atlas release summary for Brassica rapa.

1938
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 598 20 BAHD (263) View species results
Alkaloid pathway 432 17 7DLGT (75) View species results
Phenylpropanoid pathway 407 11 POD (183) View species results
Flavonoid pathway 231 11 UFGT (148) View species results
Rosmarinic acid pathway 154 7 C4H (63) View species results
Steroid pathway 116 13 SMT1/SMT2/SMT3 (42) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1919 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 380 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Steroid pathway
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Gene Pathway Family Confidence Status
Bra035120.1-P Steroid CAS medium pass
Bra035809.1-P Steroid CAS medium pass
Bra035927.1-P Steroid CAS low borderline
Bra036114.1-P Steroid CAS medium pass
Bra036115.1-P Steroid CAS medium pass
Bra036239.1-P Steroid CAS medium pass
Bra036448.1-P Steroid CAS medium pass
Bra036910.1-P Steroid CAS medium pass
Bra037620.1-P Steroid CAS medium pass
Bra037682.1-P Steroid CAS medium pass
Bra038504.1-P Steroid CAS low borderline
Bra039238.1-P Steroid CAS low borderline
Bra039708.1-P Steroid CAS medium pass
Bra039929.1-P Steroid CAS medium pass
Bra040417.1-P Steroid CAS medium pass
Bra040920.1-P Steroid CAS low borderline
Bra003129.1-P Steroid CPD/CYP90A1 medium borderline
Bra006987.1-P Steroid CPD/CYP90A1 medium borderline
Bra006988.1-P Steroid CPD/CYP90A1 medium borderline
Bra007259.1-P Steroid CPD/CYP90A1 low borderline
Bra012046.1-P Steroid CPD/CYP90A1 medium borderline
Bra013505.1-P Steroid CPD/CYP90A1 low borderline
Bra016584.1-P Steroid CPD/CYP90A1 low borderline
Bra017819.1-P Steroid CPD/CYP90A1 low borderline
Bra018051.1-P Steroid CPD/CYP90A1 low borderline
Bra019551.1-P Steroid CPD/CYP90A1 low borderline
Bra025192.1-P Steroid CPD/CYP90A1 medium borderline
Bra025289.1-P Steroid CPD/CYP90A1 low borderline
Bra025944.1-P Steroid CPD/CYP90A1 low borderline
Bra027898.1-P Steroid CPD/CYP90A1 medium borderline
Bra027899.1-P Steroid CPD/CYP90A1 medium borderline
Bra033621.1-P Steroid CPD/CYP90A1 low borderline
Bra035844.1-P Steroid CPD/CYP90A1 low borderline
Bra036345.1-P Steroid CPD/CYP90A1 medium borderline
Bra039328.1-P Steroid CPD/CYP90A1 medium borderline
Bra000625.1-P Steroid CPI1 high pass
Bra007824.1-P Steroid CPI1 high pass
Bra001329.1-P Steroid CYP51G1 medium borderline
Bra001799.1-P Steroid CYP51G1 low borderline
Bra011671.1-P Steroid CYP51G1 medium borderline
Bra012514.1-P Steroid CYP51G1 medium borderline
Bra013634.1-P Steroid CYP51G1 medium borderline
Bra016820.1-P Steroid CYP51G1 medium borderline
Bra016822.1-P Steroid CYP51G1 medium pass
Bra017752.1-P Steroid CYP51G1 medium borderline
Bra018069.1-P Steroid CYP51G1 medium borderline
Bra019366.1-P Steroid CYP51G1 medium borderline
Bra019538.1-P Steroid CYP51G1 medium borderline
Bra019839.1-P Steroid CYP51G1 medium borderline
Bra020836.1-P Steroid CYP51G1 medium borderline