PlantSME Plant secondary metabolism enzyme database

Brassica rapa (brassica_rapa)

Imported from atlas release summary for Brassica rapa.

1938
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 598 20 BAHD (263) View species results
Alkaloid pathway 432 17 7DLGT (75) View species results
Phenylpropanoid pathway 407 11 POD (183) View species results
Flavonoid pathway 231 11 UFGT (148) View species results
Rosmarinic acid pathway 154 7 C4H (63) View species results
Steroid pathway 116 13 SMT1/SMT2/SMT3 (42) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1919 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 380 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Gene Pathway Family Confidence Status
Bra016378.1-P Alkaloid 8HGO medium borderline
Bra019844.1-P Alkaloid 8HGO low borderline
Bra020469.1-P Alkaloid 8HGO medium borderline
Bra022263.1-P Alkaloid 8HGO low borderline
Bra023290.1-P Alkaloid 8HGO medium borderline
Bra025081.1-P Alkaloid 8HGO medium borderline
Bra026940.1-P Alkaloid 8HGO low borderline
Bra027516.1-P Alkaloid 8HGO medium borderline
Bra031208.1-P Alkaloid 8HGO medium borderline
Bra031390.1-P Alkaloid 8HGO medium borderline
Bra033706.1-P Alkaloid 8HGO medium borderline
Bra009229.1-P Alkaloid ADC medium pass
Bra011554.1-P Alkaloid ADC medium pass
Bra011555.1-P Alkaloid ADC medium pass
Bra017672.1-P Alkaloid ADC medium pass
Bra034648.1-P Alkaloid ADC medium pass
Bra005390.1-P Alkaloid BBE medium borderline
Bra005392.1-P Alkaloid BBE medium borderline
Bra006964.1-P Alkaloid BBE medium borderline
Bra013472.1-P Alkaloid BBE medium borderline
Bra013473.1-P Alkaloid BBE medium borderline
Bra013475.1-P Alkaloid BBE medium borderline
Bra013476.1-P Alkaloid BBE medium borderline
Bra013478.1-P Alkaloid BBE medium borderline
Bra013501.1-P Alkaloid BBE medium borderline
Bra014885.1-P Alkaloid BBE medium borderline
Bra014886.1-P Alkaloid BBE medium borderline
Bra014890.1-P Alkaloid BBE medium borderline
Bra016272.1-P Alkaloid BBE medium borderline
Bra019831.1-P Alkaloid BBE medium borderline
Bra020915.1-P Alkaloid BBE medium borderline
Bra021930.1-P Alkaloid BBE medium borderline
Bra022992.1-P Alkaloid BBE medium borderline
Bra023122.1-P Alkaloid BBE medium borderline
Bra023123.1-P Alkaloid BBE medium borderline
Bra023124.1-P Alkaloid BBE medium borderline
Bra023126.1-P Alkaloid BBE medium borderline
Bra023127.1-P Alkaloid BBE medium borderline
Bra023131.1-P Alkaloid BBE medium borderline
Bra024717.1-P Alkaloid BBE medium borderline
Bra024719.1-P Alkaloid BBE medium borderline
Bra027547.1-P Alkaloid BBE medium borderline
Bra027549.1-P Alkaloid BBE medium borderline
Bra027550.1-P Alkaloid BBE medium borderline
Bra027552.1-P Alkaloid BBE medium borderline
Bra027553.1-P Alkaloid BBE medium borderline
Bra027554.1-P Alkaloid BBE medium borderline
Bra027555.1-P Alkaloid BBE medium borderline
Bra028530.1-P Alkaloid BBE medium borderline
Bra031780.1-P Alkaloid BBE medium borderline