PlantSME Plant secondary metabolism enzyme database

Brassica rapa (brassica_rapa)

Imported from atlas release summary for Brassica rapa.

2396
Candidate Protein Records
1938
Pathway-Level Records
4856
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 598 20 BAHD (263) View species results
Alkaloid pathway 432 17 7DLGT (75) View species results
Phenylpropanoid pathway 407 11 POD (183) View species results
Flavonoid pathway 231 11 UFGT (148) View species results
Rosmarinic acid pathway 154 7 C4H (63) View species results
Steroid pathway 116 13 SMT1/SMT2/SMT3 (42) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1919 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 380 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Protein/Isoform Record Pathway Family Confidence Status
Bra033739.1-P Alkaloid BBE medium borderline
Bra033740.1-P Alkaloid BBE medium borderline
Bra033743.1-P Alkaloid BBE medium borderline
Bra038798.1-P Alkaloid BBE medium borderline
Bra038799.1-P Alkaloid BBE medium borderline
Bra003996.1-P Alkaloid CNMT low borderline
Bra011414.1-P Alkaloid CNMT medium borderline
Bra021334.1-P Alkaloid CNMT low borderline
Bra021677.1-P Alkaloid CNMT low borderline
Bra023723.1-P Alkaloid CNMT low borderline
Bra026549.1-P Alkaloid CNMT low borderline
Bra027234.1-P Alkaloid CNMT low borderline
Bra028904.1-P Alkaloid CNMT low borderline
Bra037027.1-P Alkaloid CNMT medium borderline
Bra000045.1-P Alkaloid CODM/T6ODM medium borderline
Bra000712.1-P Alkaloid CODM/T6ODM medium borderline
Bra000713.1-P Alkaloid CODM/T6ODM medium borderline
Bra001476.1-P Alkaloid CODM/T6ODM medium borderline
Bra001513.1-P Alkaloid CODM/T6ODM medium borderline
Bra001729.1-P Alkaloid CODM/T6ODM medium borderline
Bra002298.1-P Alkaloid CODM/T6ODM medium borderline
Bra002299.1-P Alkaloid CODM/T6ODM medium borderline
Bra002300.1-P Alkaloid CODM/T6ODM low borderline
Bra002628.1-P Alkaloid CODM/T6ODM medium borderline
Bra003687.1-P Alkaloid CODM/T6ODM medium borderline
Bra004867.1-P Alkaloid CODM/T6ODM medium borderline
Bra005415.1-P Alkaloid CODM/T6ODM medium borderline
Bra005860.1-P Alkaloid CODM/T6ODM medium borderline
Bra005927.1-P Alkaloid CODM/T6ODM medium borderline
Bra006559.1-P Alkaloid CODM/T6ODM medium borderline
Bra006710.1-P Alkaloid CODM/T6ODM medium borderline
Bra006711.1-P Alkaloid CODM/T6ODM medium borderline
Bra006712.1-P Alkaloid CODM/T6ODM medium borderline
Bra006713.1-P Alkaloid CODM/T6ODM medium borderline
Bra006714.1-P Alkaloid CODM/T6ODM medium borderline
Bra007607.1-P Alkaloid CODM/T6ODM medium borderline
Bra008302.1-P Alkaloid CODM/T6ODM medium borderline
Bra008480.1-P Alkaloid CODM/T6ODM medium borderline
Bra008481.1-P Alkaloid CODM/T6ODM medium borderline
Bra009285.1-P Alkaloid CODM/T6ODM medium borderline
Bra010064.1-P Alkaloid CODM/T6ODM medium borderline
Bra010469.1-P Alkaloid CODM/T6ODM medium borderline
Bra010470.1-P Alkaloid CODM/T6ODM medium borderline
Bra010472.1-P Alkaloid CODM/T6ODM medium borderline
Bra010802.1-P Alkaloid CODM/T6ODM medium borderline
Bra012691.1-P Alkaloid CODM/T6ODM medium borderline
Bra013512.1-P Alkaloid CODM/T6ODM medium borderline
Bra013652.1-P Alkaloid CODM/T6ODM medium borderline
Bra013884.1-P Alkaloid CODM/T6ODM medium borderline
Bra013890.1-P Alkaloid CODM/T6ODM medium borderline