PlantSME Plant secondary metabolism enzyme database

Brassica rapa (brassica_rapa)

Imported from atlas release summary for Brassica rapa.

2396
Candidate Protein Records
1938
Pathway-Level Records
4856
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 598 20 BAHD (263) View species results
Alkaloid pathway 432 17 7DLGT (75) View species results
Phenylpropanoid pathway 407 11 POD (183) View species results
Flavonoid pathway 231 11 UFGT (148) View species results
Rosmarinic acid pathway 154 7 C4H (63) View species results
Steroid pathway 116 13 SMT1/SMT2/SMT3 (42) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1919 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 380 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Protein/Isoform Record Pathway Family Confidence Status
Bra034168.1-P Alkaloid CODM/T6ODM medium borderline
Bra034720.1-P Alkaloid CODM/T6ODM medium borderline
Bra035038.1-P Alkaloid CODM/T6ODM medium borderline
Bra035046.1-P Alkaloid CODM/T6ODM medium borderline
Bra036058.1-P Alkaloid CODM/T6ODM medium borderline
Bra037632.1-P Alkaloid CODM/T6ODM medium borderline
Bra037633.1-P Alkaloid CODM/T6ODM medium borderline
Bra037921.1-P Alkaloid CODM/T6ODM medium borderline
Bra038447.1-P Alkaloid CODM/T6ODM medium borderline
Bra038647.1-P Alkaloid CODM/T6ODM medium borderline
Bra039006.1-P Alkaloid CODM/T6ODM medium borderline
Bra039352.1-P Alkaloid CODM/T6ODM medium borderline
Bra041102.1-P Alkaloid CODM/T6ODM medium borderline
Bra000018.1-P Alkaloid COR medium pass
Bra000019.1-P Alkaloid COR medium pass
Bra005158.1-P Alkaloid COR medium pass
Bra005159.1-P Alkaloid COR medium pass
Bra005161.1-P Alkaloid COR medium pass
Bra005162.1-P Alkaloid COR medium pass
Bra005163.1-P Alkaloid COR medium pass
Bra005672.1-P Alkaloid COR medium pass
Bra007032.1-P Alkaloid COR medium pass
Bra010080.1-P Alkaloid COR medium pass
Bra027828.1-P Alkaloid COR medium pass
Bra029262.1-P Alkaloid COR medium pass
Bra034580.1-P Alkaloid COR low borderline
Bra004386.1-P Alkaloid CYP719 medium borderline
Bra016828.1-P Alkaloid CYP719 medium borderline
Bra023730.1-P Alkaloid CYP719 medium borderline
Bra023731.1-P Alkaloid CYP719 medium borderline
Bra025171.1-P Alkaloid CYP719 low borderline
Bra031773.1-P Alkaloid CYP719 medium borderline
Bra004096.1-P Alkaloid CYP80B1 low borderline
Bra005400.1-P Alkaloid CYP80B1 medium borderline
Bra009868.1-P Alkaloid CYP80B1 medium borderline
Bra016907.1-P Alkaloid CYP80B1 medium borderline
Bra026892.1-P Alkaloid CYP80B1 medium borderline
Bra008519.1-P Alkaloid CYP80F1 medium borderline
Bra016739.1-P Alkaloid CYP80F1 medium borderline
Bra017333.1-P Alkaloid CYP80F1 medium borderline
Bra019812.1-P Alkaloid CYP80F1 medium borderline
Bra032794.1-P Alkaloid CYP80F1 medium borderline
Bra033623.1-P Alkaloid CYP80F1 medium borderline
Bra000843.1-P Alkaloid G8O/G8H medium borderline
Bra001078.1-P Alkaloid G8O/G8H medium borderline
Bra001774.1-P Alkaloid G8O/G8H medium borderline
Bra002747.1-P Alkaloid G8O/G8H medium borderline
Bra003795.1-P Alkaloid G8O/G8H medium borderline
Bra005870.1-P Alkaloid G8O/G8H medium borderline
Bra006830.1-P Alkaloid G8O/G8H medium borderline