PlantSME Plant secondary metabolism enzyme database

Brassica rapa (brassica_rapa)

Imported from atlas release summary for Brassica rapa.

2396
Candidate Protein Records
1938
Pathway-Level Records
4856
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 598 20 BAHD (263) View species results
Alkaloid pathway 432 17 7DLGT (75) View species results
Phenylpropanoid pathway 407 11 POD (183) View species results
Flavonoid pathway 231 11 UFGT (148) View species results
Rosmarinic acid pathway 154 7 C4H (63) View species results
Steroid pathway 116 13 SMT1/SMT2/SMT3 (42) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1919 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 380 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Protein/Isoform Record Pathway Family Confidence Status
Bra008510.1-P Alkaloid G8O/G8H medium borderline
Bra009019.1-P Alkaloid G8O/G8H medium borderline
Bra009020.1-P Alkaloid G8O/G8H medium borderline
Bra009786.1-P Alkaloid G8O/G8H medium borderline
Bra009819.1-P Alkaloid G8O/G8H medium borderline
Bra011757.1-P Alkaloid G8O/G8H medium borderline
Bra011762.1-P Alkaloid G8O/G8H medium borderline
Bra014143.1-P Alkaloid G8O/G8H medium borderline
Bra014459.1-P Alkaloid G8O/G8H medium borderline
Bra015810.1-P Alkaloid G8O/G8H low borderline
Bra020459.1-P Alkaloid G8O/G8H medium borderline
Bra020678.1-P Alkaloid G8O/G8H medium borderline
Bra020679.1-P Alkaloid G8O/G8H medium borderline
Bra021482.1-P Alkaloid G8O/G8H medium borderline
Bra024002.1-P Alkaloid G8O/G8H medium borderline
Bra025472.1-P Alkaloid G8O/G8H medium borderline
Bra026929.1-P Alkaloid G8O/G8H medium borderline
Bra027136.1-P Alkaloid G8O/G8H medium borderline
Bra027331.1-P Alkaloid G8O/G8H medium borderline
Bra029048.1-P Alkaloid G8O/G8H medium borderline
Bra029445.1-P Alkaloid G8O/G8H medium borderline
Bra029893.1-P Alkaloid G8O/G8H medium borderline
Bra030126.1-P Alkaloid G8O/G8H medium borderline
Bra030484.1-P Alkaloid G8O/G8H medium borderline
Bra032114.1-P Alkaloid G8O/G8H medium borderline
Bra032926.1-P Alkaloid G8O/G8H medium borderline
Bra033056.1-P Alkaloid G8O/G8H medium borderline
Bra034941.1-P Alkaloid G8O/G8H medium borderline
Bra039189.1-P Alkaloid G8O/G8H medium borderline
Bra039236.1-P Alkaloid G8O/G8H medium borderline
Bra039327.1-P Alkaloid G8O/G8H medium borderline
Bra000568.1-P Alkaloid GES medium pass
Bra000727.1-P Alkaloid GES medium pass
Bra000864.1-P Alkaloid GES low borderline
Bra001555.1-P Alkaloid GES medium pass
Bra001557.1-P Alkaloid GES medium pass
Bra002714.1-P Alkaloid GES low borderline
Bra002968.1-P Alkaloid GES medium pass
Bra009717.1-P Alkaloid GES medium pass
Bra011778.1-P Alkaloid GES low borderline
Bra012513.1-P Alkaloid GES low borderline
Bra012515.1-P Alkaloid GES medium pass
Bra012955.1-P Alkaloid GES medium pass
Bra017844.1-P Alkaloid GES low borderline
Bra020921.1-P Alkaloid GES medium pass
Bra020922.1-P Alkaloid GES medium pass
Bra020953.1-P Alkaloid GES medium pass
Bra021082.1-P Alkaloid GES medium pass
Bra021560.1-P Alkaloid GES medium pass
Bra021563.1-P Alkaloid GES medium pass