PlantSME Plant secondary metabolism enzyme database

Carthamus tinctorius (carthamus_tinctorius)

Imported from atlas release summary for Carthamus tinctorius.

2021
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 31.02% Alkaloid pathway 22.07% Phenylpropanoid pathway 19.5% Flavonoid pathway 12.72% Rosmarinic acid pathway 8.07% Steroid pathway 6.63%
Family Distribution
BAHD 6.79% C4H 6.32% C3'H/CYP98A 5.66% 4CL 4.3% UGT 3.75% CYP76 3.68% POD 3.56% 7DLGT 3.49%
Other Families 62.45%
More Families (97)
UFGT 182 3.41% IFS 168 3.15% DWF4/CYP90B1 142 2.66% T3O 139 2.61% F3H 134 2.51% SMT1/SMT2/SMT3 134 2.51% F3'H/CYP75B 124 2.33% NMT 118 2.21% STR 97 1.82% BR6OX2/CYP85A2 84 1.58% TPS 84 1.58% CODM/T6ODM 83 1.56% H6H 79 1.48% GES 77 1.44% CAS 75 1.41% CAD 74 1.39% CYP71 71 1.33% TRI/TRII 58 1.09% IFR 58 1.09% SGD 55 1.03% LAC 54 1.01% SLS 50 0.94% CSE 47 0.88% T16H 41 0.77% COMT 41 0.77% FNS 39 0.73% F5H/CYP84A 39 0.73% CYP90D1 38 0.71% G8O/G8H 37 0.69% GS 37 0.69% 8HGO 36 0.68% 7DLH 35 0.66% F3'5'H/CYP75A 35 0.66% HCT 35 0.66% IO 33 0.62% TAT 32 0.6% PMT 30 0.56% ANR 29 0.54% PYKS 27 0.51% 16OMT 25 0.47% RAS 24 0.45% CYP51G1 24 0.45% BR6OX1/CYP85A1 24 0.45% CCR 22 0.41% PAL 21 0.39% CPD/CYP90A1 21 0.39% CYP719 20 0.38% NCS 20 0.38% CPR 20 0.38% LAMT 18 0.34% BBE 18 0.34% ANS/LDOX 18 0.34% CYP80B1 17 0.32% HPPR 16 0.3% HMGR 16 0.3% ISY 15 0.28% DET2 15 0.28% COR 13 0.24% SQE 12 0.23% TDC 11 0.21% CCoAOMT 11 0.21% SQS/FDFT1 10 0.19% MPO 9 0.17% DFR 9 0.17% CNMT 8 0.15% CHS 8 0.15% FPPS 8 0.15% AACT 8 0.15% XMT_MXMT_DXMT 7 0.13% TYDC_DDC 7 0.13% ROT3/CYP90C1 7 0.13% DXS 7 0.13% MVD 7 0.13% DXR 7 0.13% CYP80F1 6 0.11% DWF7 6 0.11% 6OMT_4OMT_SOMT 5 0.09% GGPPS 5 0.09% ADC 4 0.08% CHI 4 0.08% SMO1/SMO2 4 0.08% PMK 4 0.08% FLS 3 0.06% DWF1 3 0.06% FK 3 0.06% HMGS 3 0.06% MDS/IspF 3 0.06% MVK 3 0.06% MCT/IspD 3 0.06% HDR/IspH 3 0.06% CMK/IspE 3 0.06% HYD1 2 0.04% DWF5 2 0.04% GPPS 2 0.04% IDI 2 0.04% CPI1 1 0.02% HDS/IspG 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 627 19 BAHD (246) View species results
Alkaloid pathway 446 22 7DLGT (95) View species results
Phenylpropanoid pathway 394 11 POD (168) View species results
Flavonoid pathway 257 12 UFGT (170) View species results
Rosmarinic acid pathway 163 7 C4H (62) View species results
Steroid pathway 134 12 SMT1/SMT2/SMT3 (63) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1990 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 421 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: FPPS
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Gene Pathway Family Confidence Status Best Target
Ctin01G0006600.1 Terpenoid FPPS medium pass FPPS__00002__sp_K7W9N9_CPT6_SOLLC
Ctin03G0001530.1 Terpenoid FPPS medium pass FPPS__00010__sp_Q7XYT0_FPPS2_ARTSI
Ctin07G0003160.1 Terpenoid FPPS medium pass FPPS__00002__sp_K7W9N9_CPT6_SOLLC
Ctin08G0016600.1 Terpenoid FPPS low borderline FPPS__00005__sp_P34802_GGPP1_ARATH
Ctin08G0016950.1 Terpenoid FPPS medium pass FPPS__00002__sp_K7W9N9_CPT6_SOLLC
Ctin09G0015310.1 Terpenoid FPPS medium pass FPPS__00006__sp_P49350_FPPS_ARTAN
Ctin09G0015310.2 Terpenoid FPPS medium pass FPPS__00006__sp_P49350_FPPS_ARTAN
Ctin12G0000380.1 Terpenoid FPPS medium pass FPPS__00002__sp_K7W9N9_CPT6_SOLLC