Carthamus tinctorius (carthamus_tinctorius)
Imported from atlas release summary for Carthamus tinctorius.
2021
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
2021
Candidate Genes
BAHD
6.79%
C4H
6.32%
C3'H/CYP98A
5.66%
4CL
4.3%
UGT
3.75%
CYP76
3.68%
POD
3.56%
7DLGT
3.49%
Other Families
62.45%
More Families (97)
UFGT
182
3.41%
IFS
168
3.15%
DWF4/CYP90B1
142
2.66%
T3O
139
2.61%
F3H
134
2.51%
SMT1/SMT2/SMT3
134
2.51%
F3'H/CYP75B
124
2.33%
NMT
118
2.21%
STR
97
1.82%
BR6OX2/CYP85A2
84
1.58%
TPS
84
1.58%
CODM/T6ODM
83
1.56%
H6H
79
1.48%
GES
77
1.44%
CAS
75
1.41%
CAD
74
1.39%
CYP71
71
1.33%
TRI/TRII
58
1.09%
IFR
58
1.09%
SGD
55
1.03%
LAC
54
1.01%
SLS
50
0.94%
CSE
47
0.88%
T16H
41
0.77%
COMT
41
0.77%
FNS
39
0.73%
F5H/CYP84A
39
0.73%
CYP90D1
38
0.71%
G8O/G8H
37
0.69%
GS
37
0.69%
8HGO
36
0.68%
7DLH
35
0.66%
F3'5'H/CYP75A
35
0.66%
HCT
35
0.66%
IO
33
0.62%
TAT
32
0.6%
PMT
30
0.56%
ANR
29
0.54%
PYKS
27
0.51%
16OMT
25
0.47%
RAS
24
0.45%
CYP51G1
24
0.45%
BR6OX1/CYP85A1
24
0.45%
CCR
22
0.41%
PAL
21
0.39%
CPD/CYP90A1
21
0.39%
CYP719
20
0.38%
NCS
20
0.38%
CPR
20
0.38%
LAMT
18
0.34%
BBE
18
0.34%
ANS/LDOX
18
0.34%
CYP80B1
17
0.32%
HPPR
16
0.3%
HMGR
16
0.3%
ISY
15
0.28%
DET2
15
0.28%
COR
13
0.24%
SQE
12
0.23%
TDC
11
0.21%
CCoAOMT
11
0.21%
SQS/FDFT1
10
0.19%
MPO
9
0.17%
DFR
9
0.17%
CNMT
8
0.15%
CHS
8
0.15%
FPPS
8
0.15%
AACT
8
0.15%
XMT_MXMT_DXMT
7
0.13%
TYDC_DDC
7
0.13%
ROT3/CYP90C1
7
0.13%
DXS
7
0.13%
MVD
7
0.13%
DXR
7
0.13%
CYP80F1
6
0.11%
DWF7
6
0.11%
6OMT_4OMT_SOMT
5
0.09%
GGPPS
5
0.09%
ADC
4
0.08%
CHI
4
0.08%
SMO1/SMO2
4
0.08%
PMK
4
0.08%
FLS
3
0.06%
DWF1
3
0.06%
FK
3
0.06%
HMGS
3
0.06%
MDS/IspF
3
0.06%
MVK
3
0.06%
MCT/IspD
3
0.06%
HDR/IspH
3
0.06%
CMK/IspE
3
0.06%
HYD1
2
0.04%
DWF5
2
0.04%
GPPS
2
0.04%
IDI
2
0.04%
CPI1
1
0.02%
HDS/IspG
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 627 | 19 | BAHD (246) | View species results |
| Alkaloid pathway | 446 | 22 | 7DLGT (95) | View species results |
| Phenylpropanoid pathway | 394 | 11 | POD (168) | View species results |
| Flavonoid pathway | 257 | 12 | UFGT (170) | View species results |
| Rosmarinic acid pathway | 163 | 7 | C4H (62) | View species results |
| Steroid pathway | 134 | 12 | SMT1/SMT2/SMT3 (63) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1990 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 421 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Ctin01G0003890.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ctin01G0003890.2 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ctin01G0003910.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ctin01G0014250.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ctin01G0014290.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ctin02G0004600.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ctin02G0013450.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ctin02G0018520.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ctin03G0001560.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ctin03G0004960.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ctin03G0010270.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ctin03G0010330.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ctin03G0010340.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ctin03G0010370.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ctin03G0010380.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ctin03G0023440.1 | Alkaloid | STR | low | borderline | STR__00002__sp_P68175_STSY_RAUSE |
| Ctin03G0023470.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Ctin03G0023480.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Ctin03G0029940.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ctin04G0004860.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ctin04G0022010.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ctin04G0022920.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ctin04G0022920.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ctin05G0002440.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ctin05G0002440.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ctin05G0008040.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ctin05G0008050.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ctin05G0008050.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ctin05G0008100.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ctin05G0012750.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ctin05G0012770.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ctin06G0001370.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ctin06G0002830.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ctin06G0002830.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ctin06G0002830.3 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ctin06G0008860.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Ctin06G0009510.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ctin06G0026230.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ctin07G0009460.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ctin07G0017320.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ctin08G0006430.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ctin08G0007080.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ctin08G0007920.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ctin08G0016810.1 | Alkaloid | STR | low | borderline | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Ctin08G0016810.2 | Alkaloid | STR | low | borderline | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Ctin08G0025870.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Ctin08G0027160.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ctin08G0028700.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ctin09G0001740.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ctin09G0001740.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |