PlantSME Plant secondary metabolism enzyme database

Carthamus tinctorius (carthamus_tinctorius)

Imported from atlas release summary for Carthamus tinctorius.

2021
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 31.02% Alkaloid pathway 22.07% Phenylpropanoid pathway 19.5% Flavonoid pathway 12.72% Rosmarinic acid pathway 8.07% Steroid pathway 6.63%
Family Distribution
BAHD 6.79% C4H 6.32% C3'H/CYP98A 5.66% 4CL 4.3% UGT 3.75% CYP76 3.68% POD 3.56% 7DLGT 3.49%
Other Families 62.45%
More Families (97)
UFGT 182 3.41% IFS 168 3.15% DWF4/CYP90B1 142 2.66% T3O 139 2.61% F3H 134 2.51% SMT1/SMT2/SMT3 134 2.51% F3'H/CYP75B 124 2.33% NMT 118 2.21% STR 97 1.82% BR6OX2/CYP85A2 84 1.58% TPS 84 1.58% CODM/T6ODM 83 1.56% H6H 79 1.48% GES 77 1.44% CAS 75 1.41% CAD 74 1.39% CYP71 71 1.33% TRI/TRII 58 1.09% IFR 58 1.09% SGD 55 1.03% LAC 54 1.01% SLS 50 0.94% CSE 47 0.88% T16H 41 0.77% COMT 41 0.77% FNS 39 0.73% F5H/CYP84A 39 0.73% CYP90D1 38 0.71% G8O/G8H 37 0.69% GS 37 0.69% 8HGO 36 0.68% 7DLH 35 0.66% F3'5'H/CYP75A 35 0.66% HCT 35 0.66% IO 33 0.62% TAT 32 0.6% PMT 30 0.56% ANR 29 0.54% PYKS 27 0.51% 16OMT 25 0.47% RAS 24 0.45% CYP51G1 24 0.45% BR6OX1/CYP85A1 24 0.45% CCR 22 0.41% PAL 21 0.39% CPD/CYP90A1 21 0.39% CYP719 20 0.38% NCS 20 0.38% CPR 20 0.38% LAMT 18 0.34% BBE 18 0.34% ANS/LDOX 18 0.34% CYP80B1 17 0.32% HPPR 16 0.3% HMGR 16 0.3% ISY 15 0.28% DET2 15 0.28% COR 13 0.24% SQE 12 0.23% TDC 11 0.21% CCoAOMT 11 0.21% SQS/FDFT1 10 0.19% MPO 9 0.17% DFR 9 0.17% CNMT 8 0.15% CHS 8 0.15% FPPS 8 0.15% AACT 8 0.15% XMT_MXMT_DXMT 7 0.13% TYDC_DDC 7 0.13% ROT3/CYP90C1 7 0.13% DXS 7 0.13% MVD 7 0.13% DXR 7 0.13% CYP80F1 6 0.11% DWF7 6 0.11% 6OMT_4OMT_SOMT 5 0.09% GGPPS 5 0.09% ADC 4 0.08% CHI 4 0.08% SMO1/SMO2 4 0.08% PMK 4 0.08% FLS 3 0.06% DWF1 3 0.06% FK 3 0.06% HMGS 3 0.06% MDS/IspF 3 0.06% MVK 3 0.06% MCT/IspD 3 0.06% HDR/IspH 3 0.06% CMK/IspE 3 0.06% HYD1 2 0.04% DWF5 2 0.04% GPPS 2 0.04% IDI 2 0.04% CPI1 1 0.02% HDS/IspG 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 627 19 BAHD (246) View species results
Alkaloid pathway 446 22 7DLGT (95) View species results
Phenylpropanoid pathway 394 11 POD (168) View species results
Flavonoid pathway 257 12 UFGT (170) View species results
Rosmarinic acid pathway 163 7 C4H (62) View species results
Steroid pathway 134 12 SMT1/SMT2/SMT3 (63) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1990 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 421 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
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Gene Pathway Family Confidence Status Best Target
Ctin11G0004240.1 Alkaloid NMT medium pass NMT__00021__sp_O64827_SUVR5_ARATH
Ctin11G0016650.1 Alkaloid NMT low borderline NMT__00016__sp_F4JNX3_CMKMT_ARATH
Ctin11G0016650.2 Alkaloid NMT low borderline NMT__00016__sp_F4JNX3_CMKMT_ARATH
Ctin11G0016650.3 Alkaloid NMT low borderline NMT__00016__sp_F4JNX3_CMKMT_ARATH
Ctin11G0016780.1 Alkaloid NMT low borderline NMT__00056__sp_Q9FNE9_ATXR6_ARATH
Ctin11G0020040.1 Alkaloid NMT low borderline NMT__00056__sp_Q9FNE9_ATXR6_ARATH
Ctin11G0026430.1 Alkaloid NMT medium pass NMT__00048__sp_Q8W595_SUVR4_ARATH
Ctin11G0026530.1 Alkaloid NMT low borderline NMT__00048__sp_Q8W595_SUVR4_ARATH
Ctin11G0026580.1 Alkaloid NMT medium borderline NMT__00070__sp_W5U2K2_NMT_CATRO
Ctin12G0001760.1 Alkaloid NMT medium pass NMT__00047__sp_Q8VZJ1_ATXR5_ARATH
Ctin12G0001780.1 Alkaloid NMT medium pass NMT__00047__sp_Q8VZJ1_ATXR5_ARATH
Ctin12G0001780.2 Alkaloid NMT medium pass NMT__00047__sp_Q8VZJ1_ATXR5_ARATH
Ctin12G0007460.1 Alkaloid NMT medium pass NMT__00049__sp_Q93YF5_SUVH1_TOBAC
Ctin12G0012130.1 Alkaloid NMT medium pass NMT__00049__sp_Q93YF5_SUVH1_TOBAC
Ctin12G0020700.1 Alkaloid NMT medium pass NMT__00055__sp_Q9FNC7_SUVR2_ARATH
Ctin12G0022290.1 Alkaloid NMT medium pass NMT__00069__sp_Q9ZSM8_EZA1_ARATH
Ctin12G0022610.1 Alkaloid NMT medium pass NMT__00042__sp_Q8GZB6_SUVH4_ARATH
Ctin12G0022610.2 Alkaloid NMT medium pass NMT__00042__sp_Q8GZB6_SUVH4_ARATH