Carthamus tinctorius (carthamus_tinctorius)
Imported from atlas release summary for Carthamus tinctorius.
2570
Candidate Protein Records
2021
Pathway-Level Records
5331
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
5331
Family-Level Calls
BAHD
6.79%
C4H
6.32%
C3'H/CYP98A
5.66%
4CL
4.3%
UGT
3.75%
CYP76
3.68%
POD
3.56%
7DLGT
3.49%
Other Families
62.45%
More Families (97)
UFGT
182
3.41%
IFS
168
3.15%
DWF4/CYP90B1
142
2.66%
T3O
139
2.61%
F3H
134
2.51%
SMT1/SMT2/SMT3
134
2.51%
F3'H/CYP75B
124
2.33%
NMT
118
2.21%
STR
97
1.82%
BR6OX2/CYP85A2
84
1.58%
TPS
84
1.58%
CODM/T6ODM
83
1.56%
H6H
79
1.48%
GES
77
1.44%
CAS
75
1.41%
CAD
74
1.39%
CYP71
71
1.33%
TRI/TRII
58
1.09%
IFR
58
1.09%
SGD
55
1.03%
LAC
54
1.01%
SLS
50
0.94%
CSE
47
0.88%
T16H
41
0.77%
COMT
41
0.77%
FNS
39
0.73%
F5H/CYP84A
39
0.73%
CYP90D1
38
0.71%
G8O/G8H
37
0.69%
GS
37
0.69%
8HGO
36
0.68%
7DLH
35
0.66%
F3'5'H/CYP75A
35
0.66%
HCT
35
0.66%
IO
33
0.62%
TAT
32
0.6%
PMT
30
0.56%
ANR
29
0.54%
PYKS
27
0.51%
16OMT
25
0.47%
RAS
24
0.45%
CYP51G1
24
0.45%
BR6OX1/CYP85A1
24
0.45%
CCR
22
0.41%
PAL
21
0.39%
CPD/CYP90A1
21
0.39%
CYP719
20
0.38%
NCS
20
0.38%
CPR
20
0.38%
LAMT
18
0.34%
BBE
18
0.34%
ANS/LDOX
18
0.34%
CYP80B1
17
0.32%
HPPR
16
0.3%
HMGR
16
0.3%
ISY
15
0.28%
DET2
15
0.28%
COR
13
0.24%
SQE
12
0.23%
TDC
11
0.21%
CCoAOMT
11
0.21%
SQS/FDFT1
10
0.19%
MPO
9
0.17%
DFR
9
0.17%
CNMT
8
0.15%
CHS
8
0.15%
FPPS
8
0.15%
AACT
8
0.15%
XMT_MXMT_DXMT
7
0.13%
TYDC_DDC
7
0.13%
ROT3/CYP90C1
7
0.13%
DXS
7
0.13%
MVD
7
0.13%
DXR
7
0.13%
CYP80F1
6
0.11%
DWF7
6
0.11%
6OMT_4OMT_SOMT
5
0.09%
GGPPS
5
0.09%
ADC
4
0.08%
CHI
4
0.08%
SMO1/SMO2
4
0.08%
PMK
4
0.08%
FLS
3
0.06%
DWF1
3
0.06%
FK
3
0.06%
HMGS
3
0.06%
MDS/IspF
3
0.06%
MVK
3
0.06%
MCT/IspD
3
0.06%
HDR/IspH
3
0.06%
CMK/IspE
3
0.06%
HYD1
2
0.04%
DWF5
2
0.04%
GPPS
2
0.04%
IDI
2
0.04%
CPI1
1
0.02%
HDS/IspG
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 627 | 19 | BAHD (246) | View species results |
| Alkaloid pathway | 446 | 22 | 7DLGT (95) | View species results |
| Phenylpropanoid pathway | 394 | 11 | POD (168) | View species results |
| Flavonoid pathway | 257 | 12 | UFGT (170) | View species results |
| Rosmarinic acid pathway | 163 | 7 | C4H (62) | View species results |
| Steroid pathway | 134 | 12 | SMT1/SMT2/SMT3 (63) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1990 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 421 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
| Protein/Isoform Record | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| Ctin08G0024040.1 | Alkaloid | PYKS | high | pass |
| Ctin09G0021460.1 | Alkaloid | PYKS | low | borderline |
| Ctin10G0004950.1 | Alkaloid | PYKS | low | borderline |
| Ctin11G0022730.1 | Alkaloid | PYKS | low | borderline |
| Ctin12G0021150.1 | Alkaloid | PYKS | low | borderline |
| Ctin12G0021160.1 | Alkaloid | PYKS | low | borderline |
| Ctin01G0016560.1 | Alkaloid | SGD | medium | pass |
| Ctin01G0016580.1 | Alkaloid | SGD | medium | pass |
| Ctin01G0016580.2 | Alkaloid | SGD | medium | pass |
| Ctin01G0016580.3 | Alkaloid | SGD | medium | pass |
| Ctin01G0016580.4 | Alkaloid | SGD | medium | pass |
| Ctin01G0016590.1 | Alkaloid | SGD | medium | pass |
| Ctin01G0016600.1 | Alkaloid | SGD | low | borderline |
| Ctin02G0021280.1 | Alkaloid | SGD | low | borderline |
| Ctin03G0000040.1 | Alkaloid | SGD | medium | pass |
| Ctin03G0000040.2 | Alkaloid | SGD | medium | pass |
| Ctin03G0002540.1 | Alkaloid | SGD | medium | pass |
| Ctin03G0002540.2 | Alkaloid | SGD | low | borderline |
| Ctin03G0002540.3 | Alkaloid | SGD | medium | pass |
| Ctin03G0012380.1 | Alkaloid | SGD | medium | pass |
| Ctin03G0015280.1 | Alkaloid | SGD | medium | pass |
| Ctin03G0015280.2 | Alkaloid | SGD | medium | pass |
| Ctin03G0015280.4 | Alkaloid | SGD | medium | pass |
| Ctin03G0015330.1 | Alkaloid | SGD | medium | pass |
| Ctin03G0015350.1 | Alkaloid | SGD | medium | pass |
| Ctin03G0015380.1 | Alkaloid | SGD | medium | pass |
| Ctin03G0015380.2 | Alkaloid | SGD | medium | pass |
| Ctin03G0015420.1 | Alkaloid | SGD | medium | pass |
| Ctin03G0015420.2 | Alkaloid | SGD | medium | pass |
| Ctin03G0015420.3 | Alkaloid | SGD | medium | pass |
| Ctin03G0015420.4 | Alkaloid | SGD | low | borderline |
| Ctin03G0015480.1 | Alkaloid | SGD | medium | pass |
| Ctin03G0015480.2 | Alkaloid | SGD | low | borderline |
| Ctin03G0015480.3 | Alkaloid | SGD | medium | pass |
| Ctin03G0015490.1 | Alkaloid | SGD | medium | pass |
| Ctin03G0015490.2 | Alkaloid | SGD | medium | pass |
| Ctin03G0015490.3 | Alkaloid | SGD | low | borderline |
| Ctin03G0015490.4 | Alkaloid | SGD | low | borderline |
| Ctin03G0015530.1 | Alkaloid | SGD | low | borderline |
| Ctin03G0015530.2 | Alkaloid | SGD | low | borderline |
| Ctin03G0015530.3 | Alkaloid | SGD | medium | pass |
| Ctin03G0015530.4 | Alkaloid | SGD | medium | pass |
| Ctin04G0008550.1 | Alkaloid | SGD | medium | pass |
| Ctin04G0012140.1 | Alkaloid | SGD | medium | pass |
| Ctin04G0012140.2 | Alkaloid | SGD | medium | pass |
| Ctin04G0012140.3 | Alkaloid | SGD | medium | pass |
| Ctin04G0012140.4 | Alkaloid | SGD | medium | pass |
| Ctin07G0003370.1 | Alkaloid | SGD | medium | pass |
| Ctin07G0018260.1 | Alkaloid | SGD | medium | pass |
| Ctin07G0024450.1 | Alkaloid | SGD | low | borderline |