Chiococca alba (chiococca_alba)
Imported from atlas release summary for Chiococca alba.
2531
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
2531
Candidate Genes
C4H
6.47%
BAHD
6.34%
C3'H/CYP98A
5.91%
UGT
4.38%
IFS
4.08%
7DLGT
3.81%
UFGT
3.68%
CYP76
3.33%
Other Families
62.0%
More Families (96)
4CL
204
3.16%
POD
194
3.0%
T3O
193
2.99%
F3H
174
2.69%
STR
152
2.35%
NMT
152
2.35%
DWF4/CYP90B1
151
2.34%
BR6OX2/CYP85A2
134
2.07%
F3'H/CYP75B
133
2.06%
H6H
105
1.62%
CAD
101
1.56%
CYP71
97
1.5%
TRI/TRII
90
1.39%
CODM/T6ODM
90
1.39%
7DLH
89
1.38%
SMT1/SMT2/SMT3
88
1.36%
TPS
72
1.11%
IFR
71
1.1%
GES
70
1.08%
CAS
69
1.07%
SGD
64
0.99%
GS
61
0.94%
CYP90D1
61
0.94%
HCT
58
0.9%
LAC
54
0.84%
TAT
53
0.82%
SLS
52
0.8%
IO
50
0.77%
FNS
50
0.77%
CSE
49
0.76%
T16H
48
0.74%
PYKS
46
0.71%
G8O/G8H
45
0.7%
BBE
43
0.67%
RAS
40
0.62%
CPD/CYP90A1
40
0.62%
PMT
36
0.56%
CYP51G1
34
0.53%
F5H/CYP84A
33
0.51%
BR6OX1/CYP85A1
32
0.5%
NCS
30
0.46%
ANR
29
0.45%
PAL
27
0.42%
COMT
27
0.42%
F3'5'H/CYP75A
26
0.4%
CNMT
24
0.37%
CCR
23
0.36%
LAMT
21
0.32%
8HGO
20
0.31%
ANS/LDOX
19
0.29%
CHS
19
0.29%
FPPS
18
0.28%
GGPPS
18
0.28%
ROT3/CYP90C1
17
0.26%
16OMT
16
0.25%
CYP80B1
16
0.25%
COR
16
0.25%
MPO
15
0.23%
ISY
14
0.22%
CYP719
14
0.22%
DET2
14
0.22%
SMO1/SMO2
14
0.22%
DXS
14
0.22%
HMGR
14
0.22%
CHI
13
0.2%
DFR
13
0.2%
HPPR
11
0.17%
CMK/IspE
11
0.17%
SQS/FDFT1
10
0.15%
CPR
9
0.14%
AACT
9
0.14%
6OMT_4OMT_SOMT
8
0.12%
SQE
7
0.11%
MVK
7
0.11%
TYDC_DDC
6
0.09%
TDC
6
0.09%
FLS
6
0.09%
CCoAOMT
6
0.09%
DWF1
6
0.09%
MVD
5
0.08%
DWF7
4
0.06%
HDR/IspH
3
0.05%
HMGS
3
0.05%
ADC
2
0.03%
CYP80F1
2
0.03%
FK
2
0.03%
DWF5
2
0.03%
HYD1
2
0.03%
CPI1
2
0.03%
MCT/IspD
2
0.03%
IDI
2
0.03%
ODC
1
0.02%
HDS/IspG
1
0.02%
DXR
1
0.02%
MDS/IspF
1
0.02%
PMK
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 804 | 19 | BAHD (329) | View species results |
| Alkaloid pathway | 614 | 25 | 7DLGT (110) | View species results |
| Phenylpropanoid pathway | 415 | 12 | POD (166) | View species results |
| Flavonoid pathway | 325 | 11 | UFGT (209) | View species results |
| Rosmarinic acid pathway | 208 | 7 | C4H (90) | View species results |
| Steroid pathway | 165 | 16 | CAS (60) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 2546 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 508 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Calb3140180730.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Calb3160181980.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Calb3160182000.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Calb3160182010.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Calb3160182020.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Calb3160182020.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Calb3480210280.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Calb3610226390.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Calb3680227970.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Calb4380236390.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Calb4380236450.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Calb4380236450.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Calb4380236450.3 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Calb4380236610.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Calb4380236610.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Calb4380236610.3 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Calb4380236610.4 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Calb4430238210.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Calb4630243160.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Calb4630243200.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Calb4680244570.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Calb4680244580.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Calb4680244590.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Calb4680244600.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Calb4680244610.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Calb4680244610.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Calb4680244620.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Calb4890248440.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Calb4890248440.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Calb4890248440.3 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Calb4890248440.4 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Calb4890248440.5 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Calb4890248450.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Calb505210253410.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Calb5580267230.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Calb5590267420.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Calb658590282600.1 | Alkaloid | STR | medium | pass | STR__00002__sp_P68175_STSY_RAUSE |
| Calb6820290580.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Calb6870292350.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Calb701700294390.1 | Alkaloid | STR | medium | pass | STR__00002__sp_P68175_STSY_RAUSE |
| Calb7220300430.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Calb7220300430.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Calb732230303710.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Calb747720306580.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Calb757180309760.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Calb767450314950.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Calb772780322320.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Calb774260326070.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Calb774870327280.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Calb777150340120.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |