PlantSME Plant secondary metabolism enzyme database

Chiococca alba (chiococca_alba)

Imported from atlas release summary for Chiococca alba.

2531
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 31.77% Alkaloid pathway 24.26% Phenylpropanoid pathway 16.4% Flavonoid pathway 12.84% Rosmarinic acid pathway 8.22% Steroid pathway 6.52%
Family Distribution
C4H 6.47% BAHD 6.34% C3'H/CYP98A 5.91% UGT 4.38% IFS 4.08% 7DLGT 3.81% UFGT 3.68% CYP76 3.33%
Other Families 62.0%
More Families (96)
4CL 204 3.16% POD 194 3.0% T3O 193 2.99% F3H 174 2.69% STR 152 2.35% NMT 152 2.35% DWF4/CYP90B1 151 2.34% BR6OX2/CYP85A2 134 2.07% F3'H/CYP75B 133 2.06% H6H 105 1.62% CAD 101 1.56% CYP71 97 1.5% TRI/TRII 90 1.39% CODM/T6ODM 90 1.39% 7DLH 89 1.38% SMT1/SMT2/SMT3 88 1.36% TPS 72 1.11% IFR 71 1.1% GES 70 1.08% CAS 69 1.07% SGD 64 0.99% GS 61 0.94% CYP90D1 61 0.94% HCT 58 0.9% LAC 54 0.84% TAT 53 0.82% SLS 52 0.8% IO 50 0.77% FNS 50 0.77% CSE 49 0.76% T16H 48 0.74% PYKS 46 0.71% G8O/G8H 45 0.7% BBE 43 0.67% RAS 40 0.62% CPD/CYP90A1 40 0.62% PMT 36 0.56% CYP51G1 34 0.53% F5H/CYP84A 33 0.51% BR6OX1/CYP85A1 32 0.5% NCS 30 0.46% ANR 29 0.45% PAL 27 0.42% COMT 27 0.42% F3'5'H/CYP75A 26 0.4% CNMT 24 0.37% CCR 23 0.36% LAMT 21 0.32% 8HGO 20 0.31% ANS/LDOX 19 0.29% CHS 19 0.29% FPPS 18 0.28% GGPPS 18 0.28% ROT3/CYP90C1 17 0.26% 16OMT 16 0.25% CYP80B1 16 0.25% COR 16 0.25% MPO 15 0.23% ISY 14 0.22% CYP719 14 0.22% DET2 14 0.22% SMO1/SMO2 14 0.22% DXS 14 0.22% HMGR 14 0.22% CHI 13 0.2% DFR 13 0.2% HPPR 11 0.17% CMK/IspE 11 0.17% SQS/FDFT1 10 0.15% CPR 9 0.14% AACT 9 0.14% 6OMT_4OMT_SOMT 8 0.12% SQE 7 0.11% MVK 7 0.11% TYDC_DDC 6 0.09% TDC 6 0.09% FLS 6 0.09% CCoAOMT 6 0.09% DWF1 6 0.09% MVD 5 0.08% DWF7 4 0.06% HDR/IspH 3 0.05% HMGS 3 0.05% ADC 2 0.03% CYP80F1 2 0.03% FK 2 0.03% DWF5 2 0.03% HYD1 2 0.03% CPI1 2 0.03% MCT/IspD 2 0.03% IDI 2 0.03% ODC 1 0.02% HDS/IspG 1 0.02% DXR 1 0.02% MDS/IspF 1 0.02% PMK 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 804 19 BAHD (329) View species results
Alkaloid pathway 614 25 7DLGT (110) View species results
Phenylpropanoid pathway 415 12 POD (166) View species results
Flavonoid pathway 325 11 UFGT (209) View species results
Rosmarinic acid pathway 208 7 C4H (90) View species results
Steroid pathway 165 16 CAS (60) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2546 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 508 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TYDC_DDC
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Gene Pathway Family Confidence Status Best Target
Calb1063920000300.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO
Calb2360111750.1 Alkaloid TYDC_DDC low borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO
Calb2790173290.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00003__sp_P17770_TDC_CATRO
Calb3740229950.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00003__sp_P17770_TDC_CATRO
Calb776370332890.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO
Calb781290347430.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO